Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CO-TYPE NITRILE HYDRATASE FROM PSEUDOMONAS PUTIDA.
 
Authors :  H. R. Brodkin, W. R. P. Novak, D. Ringe, G. A. Petsko
Date :  01 Mar 11  (Deposition) - 23 Mar 11  (Release) - 22 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Nitrile Hydratase, Co, Cobalt, Cysteine Sulfinic Acid, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. R. Brodkin, W. R. Novak, A. C. Milne, J. A. D'Aquino, N. M. Karabacak, I. G. Goldberg, J. N. Agar, M. S. Payne, G. A. Petsko, M. J. Ondrechen, D. Ringe
Evidence Of The Participation Of Remote Residues In The Catalytic Activity Of Co-Type Nitrile Hydratase From Pseudomonas Putida.
Biochemistry V. 50 4923 2011
PubMed-ID: 21473592  |  Reference-DOI: 10.1021/BI101761E

(-) Compounds

Molecule 1 - CO-TYPE NITRILE HYDRATASE ALPHA SUBUNIT
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
 
Molecule 2 - CO-TYPE NITRILE HYDRATASE BETA SUBUNIT
    Chains: B, D, F, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
13CO4Ligand/IonCOBALT (III) ION
2CSD8Mod. Amino Acid3-SULFINOALANINE
3GOL8Ligand/IonGLYCEROL
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
13CO1Ligand/IonCOBALT (III) ION
2CSD2Mod. Amino Acid3-SULFINOALANINE
3GOL2Ligand/IonGLYCEROL
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
13CO1Ligand/IonCOBALT (III) ION
2CSD2Mod. Amino Acid3-SULFINOALANINE
3GOL2Ligand/IonGLYCEROL
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
13CO1Ligand/IonCOBALT (III) ION
2CSD2Mod. Amino Acid3-SULFINOALANINE
3GOL2Ligand/IonGLYCEROL
Biological Unit 4 (3, 5)
No.NameCountTypeFull Name
13CO1Ligand/IonCOBALT (III) ION
2CSD2Mod. Amino Acid3-SULFINOALANINE
3GOL2Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:112 , CSD A:115 , SER A:116 , CSD A:117BINDING SITE FOR RESIDUE 3CO A 212
02AC2SOFTWAREHIS A:11 , GLN A:15 , LYS A:131 , ALA A:132 , ALA A:133 , HOH A:268 , TYR B:63 , LEU B:64 , GLY B:66BINDING SITE FOR RESIDUE GOL A 213
03AC3SOFTWAREARG A:138 , HIS B:11 , GLY B:12 , TYR B:13 , GLY B:14BINDING SITE FOR RESIDUE GOL B 220
04AC4SOFTWARECYS C:112 , CSD C:115 , SER C:116 , CSD C:117BINDING SITE FOR RESIDUE 3CO C 212
05AC5SOFTWAREHIS C:11 , GLY C:13 , GLN C:15 , ALA C:132 , ALA C:133 , TYR D:63 , LEU D:64 , GLY D:66BINDING SITE FOR RESIDUE GOL C 213
06AC6SOFTWAREARG C:138 , HIS D:11 , GLY D:12 , TYR D:13 , GLY D:14BINDING SITE FOR RESIDUE GOL D 220
07AC7SOFTWARECYS E:112 , CSD E:115 , SER E:116 , CSD E:117BINDING SITE FOR RESIDUE 3CO E 212
08AC8SOFTWAREHIS E:11 , GLN E:15 , ALA E:132 , ALA E:133 , TYR F:63 , LEU F:64 , GLY F:66BINDING SITE FOR RESIDUE GOL E 213
09AC9SOFTWAREHIS F:11 , GLY F:12 , TYR F:13 , GLY F:14 , HOH F:1054BINDING SITE FOR RESIDUE GOL F 220
10BC1SOFTWARECYS G:112 , CSD G:115 , SER G:116 , CSD G:117BINDING SITE FOR RESIDUE 3CO G 212
11BC2SOFTWAREHIS G:11 , GLN G:15 , ALA G:132 , ALA G:133 , HOH G:1005 , LEU H:64 , GLY H:66 , THR H:67 , TYR H:68BINDING SITE FOR RESIDUE GOL G 213
12BC3SOFTWAREHIS H:11 , GLY H:12 , TYR H:13 , GLY H:14BINDING SITE FOR RESIDUE GOL H 220

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QXE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QXE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QXE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QXE)

(-) Exons   (0, 0)

(no "Exon" information available for 3QXE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d3qxea_ A: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhh.........eeeee....eeeeee........hhhh....hhhh.hhhhhhh...hhhhhhhh........eeeeee.....eeeee...........hhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe A   7 HDHHHDGYQAPPEDIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFSGVQGEDMVILENTPAVHNVFVCTLcScYPWPTLGLPPAWYKAAPYRSRMVSDPRGVLAEFGLVIPANKEIRVWDTTAELRYMVLPERPAGTEAYSEEQLAELVTRDSMIGTGLPTQP 207
                                    16        26        36        46        56        66        76        86        96       106       116|      126       136       146       156       166       176       186       196       206 
                                                                                                                                      115-CSD                                                                                        
                                                                                                                                        117-CSD                                                                                      


Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d3qxeb_ B: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................hhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhh.....hhhhhh..............hhhhhhhhhh..................eeee............hhh...eeeeeee......hhhhhh........eeeeeeehhhhh.........eeeeeeehhheee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe B   1 MNGIHDTGGAHGYGPVYREPNEPVFRYDWEKTVMSLLPALLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAHGKGEHPQHVYTVSFTSVELWGQDASSPKDTIRVDLWDDYLEPA 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         


Chain C from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d3qxec_ C: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhh.........eeeee....eeeeee........hhhh....hhhh.hhhhhh....hhhhhhhh........eeeeee.....eeeee...........hhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe C   7 HDHHHDGYQAPPEDIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFSGVQGEDMVILENTPAVHNVFVCTLcScYPWPTLGLPPAWYKAAPYRSRMVSDPRGVLAEFGLVIPANKEIRVWDTTAELRYMVLPERPAGTEAYSEEQLAELVTRDSMIGTGLPTQP 207
                                    16        26        36        46        56        66        76        86        96       106       116|      126       136       146       156       166       176       186       196       206 
                                                                                                                                      115-CSD                                                                                        
                                                                                                                                        117-CSD                                                                                      


Chain D from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d3qxed_ D: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................hhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhh.....hhhhhh..............hhhhhhhhhh..................eeee............hhh...eeeeeee......hhhhhh........eeeeeeehhhhh.........eeeeeeehhheee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe D   1 MNGIHDTGGAHGYGPVYREPNEPVFRYDWEKTVMSLLPALLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAHGKGEHPQHVYTVSFTSVELWGQDASSPKDTIRVDLWDDYLEPA 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         


Chain E from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains d3qxee_ E: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhh.........eeeee....eeeeee........hhhh....hhhh.hhhhhh....hhhhhhhh........eeeeee.....eeeee...........hhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe E   8 DHHHDGYQAPPEDIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFSGVQGEDMVILENTPAVHNVFVCTLcScYPWPTLGLPPAWYKAAPYRSRMVSDPRGVLAEFGLVIPANKEIRVWDTTAELRYMVLPERPAGTEAYSEEQLAELVTRDSMIGTGLPTQP 207
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
                                                                                                                                     115-CSD                                                                                        
                                                                                                                                       117-CSD                                                                                      


Chain F from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d3qxef_ F: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................hhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhh.....hhhhhh..............hhhhhhhhhh..................eeee............hhh...eeeeeee......hhhhhh........eeeeeeehhhhh.........eeeeeeehhheee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe F   1 MNGIHDTGGAHGYGPVYREPNEPVFRYDWEKTVMSLLPALLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAHGKGEHPQHVYTVSFTSVELWGQDASSPKDTIRVDLWDDYLEPA 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         


Chain G from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains d3qxeg_ G: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhh.........eeeee....eeeeee........hhhh....hhhh.hhhhhhh...hhhhhhhh........eeeeee.....eeeee...........hhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe G   8 DHHHDGYQAPPEDIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFSGVQGEDMVILENTPAVHNVFVCTLcScYPWPTLGLPPAWYKAAPYRSRMVSDPRGVLAEFGLVIPANKEIRVWDTTAELRYMVLPERPAGTEAYSEEQLAELVTRDSMIGTGLPTQP 207
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
                                                                                                                                     115-CSD                                                                                        
                                                                                                                                       117-CSD                                                                                      


Chain H from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d3qxeh_ H: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................hhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhh.....hhhhhh..............hhhhhhhhhh..................eeee............hhh...eeeeeee......hhhhhh........eeeeeeehhhhh.........eeeeeeehhheee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qxe H   1 MNGIHDTGGAHGYGPVYREPNEPVFRYDWEKTVMSLLPALLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGKTATPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAHGKGEHPQHVYTVSFTSVELWGQDASSPKDTIRVDLWDDYLEPA 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QXE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QXE)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QXE)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    3CO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CSD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3qxe)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3qxe
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3QXE)

(-) Related Entries Specified in the PDB File

3qyg 3qyh 3qz5 3qz9