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(-) Description

Title :  CRYSTAL STRUCTURE OF NUDIX HYDROLASE FROM ALICYCLOBACILLUS ACIDOCALDARIUS
 
Authors :  K. Michalska, R. Wu, J. Bearden, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  21 Feb 11  (Deposition) - 13 Apr 11  (Release) - 13 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, R. Wu, J. Bearden, A. Joachimiak
Crystal Structure Of Nudix Hydrolase From Alicyclobacillus Acidocaldarius
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NUDIX HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: AACI_1025
    Organism Scientific: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS
    Organism Taxid: 521098
    Strain: DSM 446

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL3Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:43 , GLU A:79 , GLU A:83 , GOL A:232 , HOH A:234 , HOH A:235BINDING SITE FOR RESIDUE CA A 230
2AC2SOFTWAREPHE A:34 , GLY A:125 , PHE A:149BINDING SITE FOR RESIDUE GOL A 231
3AC3SOFTWAREARG A:28 , MSE A:32 , GLY A:43 , GLU A:83 , GLU A:170 , CA A:230 , HOH A:235 , HOH A:250 , HOH A:378BINDING SITE FOR RESIDUE GOL A 232
4AC4SOFTWAREASP A:3 , PRO A:164 , ALA A:173 , ALA A:174BINDING SITE FOR RESIDUE GOL A 233

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QSJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QSJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3QSJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
 aligned with C8WVE1_ALIAD | C8WVE1 from UniProtKB/TrEMBL  Length:229

    Alignment length:222
                             1                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219  
         C8WVE1_ALIAD     - -MTDIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARDMLTRIQSGELPAVRPTIAVLKALVACPNAEIAMSTLSIGP 221
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----NUDIX-3qsjA01 A:5-202                                                                                                                                                                                 ------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeee.hhh.eeeeeeee..........ee..eee.hhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhh...hhhhhhhhh...ee.hhhheeeeeee.......eeeeeeeeee.............eeeeeeeehhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qsj A   0 AmTDIRKAATLVVIRDGANKDIEVLVVRRAKTmRFLPGFVAFPGGAADPSDAEmAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKmDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARDmLTRIQSGELPAVRPTIAVLKALVACPNAEIAmSTLSIGP 221
                             |       9        19        29  |     39        49   |    59        69        79        89        99       109       119       129       139       149       159       169       179  |    189       199       209    |  219  
                             |                             32-MSE               53-MSE                                       98-MSE                                                                             182-MSE                         214-MSE   
                             1-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QSJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QSJ)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: NUDIX (85)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (C8WVE1_ALIAD | C8WVE1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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