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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE AMINO-ACID AMINOTRANSFERASE (NP_104211.1) FROM MESORHIZOBIUM LOTI AT 2.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Feb 11  (Deposition) - 02 Mar 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Amino-Acid Aminotransferase (Np_104211. 1) From Mesorhizobium Loti At 2. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MLR3007 PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MLR3007
    Organism Scientific: MESORHIZOBIUM LOTI
    Organism Taxid: 381

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 115)

Asymmetric Unit (6, 115)
No.NameCountTypeFull Name
1CL14Ligand/IonCHLORIDE ION
2EDO50Ligand/Ion1,2-ETHANEDIOL
3IOD26Ligand/IonIODIDE ION
4LLP8Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE16Mod. Amino AcidSELENOMETHIONINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
3IOD3Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (5, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3IOD4Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (4, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3IOD4Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (4, 18)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3IOD3Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 5 (4, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
3IOD2Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 6 (4, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3IOD3Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 7 (4, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3IOD3Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 8 (4, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3IOD4Ligand/IonIODIDE ION
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MSE2Mod. Amino AcidSELENOMETHIONINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (88, 88)

Asymmetric Unit (88, 88)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:90 , ARG A:212BINDING SITE FOR RESIDUE IOD A 221
02AC2SOFTWAREARG A:31 , LEU A:214BINDING SITE FOR RESIDUE IOD A 225
03AC3SOFTWAREILE A:153 , ASN A:209 , ARG A:212 , HOH A:1082BINDING SITE FOR RESIDUE IOD A 234
04AC4SOFTWAREARG A:22 , GLN A:24BINDING SITE FOR RESIDUE CL A 248
05AC5SOFTWARELEU A:46 , ARG A:78BINDING SITE FOR RESIDUE CL A 250
06AC6SOFTWAREARG A:169BINDING SITE FOR RESIDUE CL A 252
07AC7SOFTWAREASP A:33 , HOH A:819BINDING SITE FOR RESIDUE CL A 258
08AC8SOFTWAREGLU A:182 , GLU A:186BINDING SITE FOR RESIDUE CL A 260
09AC9SOFTWAREGLU A:16 , ALA A:75 , ASP A:81 , THR A:83 , ASP B:61BINDING SITE FOR RESIDUE EDO A 265
10BC1SOFTWARELEU A:113 , HIS A:116 , THR A:118 , ARG A:120BINDING SITE FOR RESIDUE EDO A 270
11BC2SOFTWAREARG A:121 , THR A:125 , THR A:152BINDING SITE FOR RESIDUE EDO A 272
12BC3SOFTWAREARG A:128 , ASP A:137 , GLU A:138 , THR A:152 , ILE A:153BINDING SITE FOR RESIDUE EDO A 275
13BC4SOFTWARELEU A:92 , ALA A:93 , HOH A:511BINDING SITE FOR RESIDUE EDO A 279
14BC5SOFTWARELEU A:205 , PHE A:206 , ALA A:217 , HOH A:1021BINDING SITE FOR RESIDUE EDO A 303
15BC6SOFTWARELYS A:96 , VAL A:133 , ASP A:137BINDING SITE FOR RESIDUE EDO A 306
16BC7SOFTWAREARG A:67 , THR A:68 , MSE A:70 , GLU B:90 , HOH B:969BINDING SITE FOR RESIDUE EDO A 309
17BC8SOFTWAREILE B:153 , ARG B:212 , HOH B:1084BINDING SITE FOR RESIDUE IOD B 236
18BC9SOFTWARELEU B:214BINDING SITE FOR RESIDUE IOD B 240
19CC1SOFTWAREASP B:108 , ASN B:111 , LEU B:123BINDING SITE FOR RESIDUE IOD B 242
20CC2SOFTWAREPRO B:25 , GLY B:26 , ALA B:66 , THR C:112BINDING SITE FOR RESIDUE PEG B 261
21CC3SOFTWARELEU B:113 , HIS B:116 , THR B:118 , ARG B:120BINDING SITE FOR RESIDUE EDO B 280
22CC4SOFTWAREARG B:31 , ARG B:34 , GLU B:182 , HOH B:919BINDING SITE FOR RESIDUE EDO B 285
23CC5SOFTWARETYR B:194 , ASP B:198BINDING SITE FOR RESIDUE EDO B 292
24CC6SOFTWAREARG B:121 , THR B:125 , ARG B:128 , THR B:152 , HOH B:1001BINDING SITE FOR RESIDUE EDO B 293
25CC7SOFTWARETHR B:20 , LLP B:117 , ASN B:209 , HOH B:506BINDING SITE FOR RESIDUE EDO B 294
26CC8SOFTWAREARG B:104 , GLU B:130 , TYR B:131 , ASP F:162BINDING SITE FOR RESIDUE EDO B 299
27CC9SOFTWAREARG C:31 , LEU C:214BINDING SITE FOR RESIDUE IOD C 226
28DC1SOFTWAREASP C:108 , ASN C:111 , LEU C:123BINDING SITE FOR RESIDUE IOD C 233
29DC2SOFTWAREILE C:153 , ARG C:212BINDING SITE FOR RESIDUE IOD C 239
30DC3SOFTWARELEU C:113 , HIS C:116 , THR C:118 , ARG C:120BINDING SITE FOR RESIDUE EDO C 269
31DC4SOFTWAREARG C:31 , ASP C:33 , ARG C:34 , GLU C:182 , HOH C:696BINDING SITE FOR RESIDUE EDO C 278
32DC5SOFTWAREILE C:193 , GLU D:144 , ARG D:145BINDING SITE FOR RESIDUE EDO C 286
33DC6SOFTWARETHR C:20 , LLP C:117 , ASN C:209 , HOH C:423 , HOH C:816BINDING SITE FOR RESIDUE EDO C 295
34DC7SOFTWAREPHE C:160 , GLY C:161 , ASP C:162 , ARG D:106 , ASN D:143 , GLU D:144 , GLY D:146BINDING SITE FOR RESIDUE EDO C 302
35DC8SOFTWAREARG C:128 , ASP C:137 , GLU C:138 , THR C:152 , ILE C:153 , HOH C:796BINDING SITE FOR RESIDUE EDO C 304
36DC9SOFTWARELEU C:199 , LYS C:200 , ALA C:202 , LEU C:219BINDING SITE FOR RESIDUE EDO C 307
37EC1SOFTWAREGLU D:90 , ARG D:212BINDING SITE FOR RESIDUE IOD D 222
38EC2SOFTWAREARG D:31 , LEU D:214BINDING SITE FOR RESIDUE IOD D 227
39EC3SOFTWAREILE D:153 , ASN D:209 , ARG D:212 , EDO D:290BINDING SITE FOR RESIDUE IOD D 232
40EC4SOFTWAREARG D:78BINDING SITE FOR RESIDUE CL D 257
41EC5SOFTWAREARG D:31 , ASP D:33 , HOH D:908BINDING SITE FOR RESIDUE CL D 259
42EC6SOFTWAREVAL C:58 , ASP C:61 , GLU D:16 , ALA D:75 , ALA D:77 , ASP D:81 , THR D:83BINDING SITE FOR RESIDUE EDO D 263
43EC7SOFTWARELEU D:113 , HIS D:116 , THR D:118 , ARG D:120 , HOH D:886BINDING SITE FOR RESIDUE EDO D 264
44EC8SOFTWAREASP C:198 , ASN D:143 , ARG D:145 , GLU D:147 , ASP D:171 , ILE D:193BINDING SITE FOR RESIDUE EDO D 271
45EC9SOFTWAREGLN D:24 , TYR D:89 , PRO D:91BINDING SITE FOR RESIDUE EDO D 277
46FC1SOFTWAREARG D:169 , GLU D:191 , HOH D:454BINDING SITE FOR RESIDUE EDO D 282
47FC2SOFTWAREARG D:121 , THR D:125 , HOH D:467 , HOH D:634BINDING SITE FOR RESIDUE EDO D 284
48FC3SOFTWAREARG D:128 , ASP D:137 , GLU D:138 , THR D:152 , ILE D:153 , HOH D:467BINDING SITE FOR RESIDUE EDO D 287
49FC4SOFTWAREASN D:111 , LEU D:114 , ARG D:120 , ARG D:121 , GLN D:122 , LEU D:123 , HOH D:862 , HOH D:938BINDING SITE FOR RESIDUE EDO D 289
50FC5SOFTWAREARG D:212 , IOD D:232BINDING SITE FOR RESIDUE EDO D 290
51FC6SOFTWARELEU D:92 , ALA D:93 , HOH D:746BINDING SITE FOR RESIDUE EDO D 291
52FC7SOFTWAREALA D:56 , PRO E:52 , GLN E:53BINDING SITE FOR RESIDUE EDO D 296
53FC8SOFTWARELEU D:205 , PHE D:206 , ALA D:217BINDING SITE FOR RESIDUE EDO D 310
54FC9SOFTWAREARG E:71 , ILE E:153 , ARG E:212BINDING SITE FOR RESIDUE IOD E 231
55GC1SOFTWAREHOH E:449BINDING SITE FOR RESIDUE IOD E 241
56GC2SOFTWAREARG E:31BINDING SITE FOR RESIDUE CL E 247
57GC3SOFTWAREARG E:78BINDING SITE FOR RESIDUE CL E 251
58GC4SOFTWAREASP E:108 , ASN E:111 , LEU E:123 , EDO E:273BINDING SITE FOR RESIDUE CL E 256
59GC5SOFTWARELEU E:113 , HIS E:116 , THR E:118 , ARG E:120 , HOH E:945BINDING SITE FOR RESIDUE EDO E 266
60GC6SOFTWARETYR E:40 , PRO E:52 , ALA E:56 , EDO E:298BINDING SITE FOR RESIDUE EDO E 267
61GC7SOFTWAREARG E:128 , ASP E:137 , GLU E:138 , THR E:152 , ILE E:153 , HOH E:363BINDING SITE FOR RESIDUE EDO E 268
62GC8SOFTWAREASN E:111 , LEU E:114 , ARG E:120 , ARG E:121 , GLN E:122 , LEU E:123 , CL E:256 , HOH E:1034BINDING SITE FOR RESIDUE EDO E 273
63GC9SOFTWAREASP E:61 , GLU F:16 , ALA F:75 , ALA F:77 , THR F:83BINDING SITE FOR RESIDUE EDO E 276
64HC1SOFTWARELEU E:205 , PHE E:206 , ALA E:217 , HOH E:544BINDING SITE FOR RESIDUE EDO E 283
65HC2SOFTWAREGLY E:163 , VAL E:164 , LEU E:165 , HOH E:777BINDING SITE FOR RESIDUE EDO E 288
66HC3SOFTWAREPHE E:32 , ALA E:56 , SER E:60 , EDO E:267BINDING SITE FOR RESIDUE EDO E 298
67HC4SOFTWAREARG E:121 , THR E:125 , HOH E:363BINDING SITE FOR RESIDUE EDO E 305
68HC5SOFTWAREGLU F:90 , ARG F:212BINDING SITE FOR RESIDUE IOD F 223
69HC6SOFTWAREARG F:31 , LEU F:214BINDING SITE FOR RESIDUE IOD F 228
70HC7SOFTWAREILE F:153 , ASN F:209 , ARG F:212BINDING SITE FOR RESIDUE IOD F 237
71HC8SOFTWARELEU F:107 , ASP F:108 , ASN F:111BINDING SITE FOR RESIDUE EDO F 297
72HC9SOFTWAREPHE F:32 , ALA F:56 , SER F:60 , HOH F:1067BINDING SITE FOR RESIDUE EDO F 301
73IC1SOFTWAREGLU G:90BINDING SITE FOR RESIDUE IOD G 224
74IC2SOFTWAREARG G:31 , LEU G:214BINDING SITE FOR RESIDUE IOD G 229
75IC3SOFTWAREILE G:153 , ASN G:209 , ARG G:212BINDING SITE FOR RESIDUE IOD G 238
76IC4SOFTWAREASP G:108 , ASN G:111 , LEU G:123BINDING SITE FOR RESIDUE CL G 255
77IC5SOFTWAREGLU G:16 , ALA G:75 , ASP G:81 , THR G:83 , ASP H:61BINDING SITE FOR RESIDUE EDO G 262
78IC6SOFTWAREASP G:33 , ARG G:34 , GLU G:182BINDING SITE FOR RESIDUE EDO G 300
79IC7SOFTWARELEU G:113 , HIS G:116 , THR G:118 , ARG G:120BINDING SITE FOR RESIDUE EDO G 308
80IC8SOFTWAREARG H:31 , LEU H:214BINDING SITE FOR RESIDUE IOD H 230
81IC9SOFTWAREILE H:153 , ASN H:209 , ARG H:212BINDING SITE FOR RESIDUE IOD H 235
82JC1SOFTWAREASP H:108 , ASN H:111 , LEU H:123BINDING SITE FOR RESIDUE IOD H 243
83JC2SOFTWAREGLN H:24BINDING SITE FOR RESIDUE CL H 249
84JC3SOFTWAREARG H:106BINDING SITE FOR RESIDUE CL H 253
85JC4SOFTWAREHOH H:1078BINDING SITE FOR RESIDUE CL H 254
86JC5SOFTWARELEU H:113 , HIS H:116 , THR H:118 , ARG H:120 , HOH H:898BINDING SITE FOR RESIDUE EDO H 274
87JC6SOFTWAREARG H:121 , THR H:125 , HOH H:663BINDING SITE FOR RESIDUE EDO H 281
88JC7SOFTWAREGLN A:53BINDING SITE FOR RESIDUE EDO H 311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QQM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QQM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QQM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QQM)

(-) Exons   (0, 0)

(no "Exon" information available for 3QQM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     
         Q98H69_RHILO     6 PLRDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeeee....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhh...eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm A   6 PLRDGDTADFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                    15     |  25        35        45        55        65    |   75        85        95       105       115 |     125       135       145       155       165       175       185       195       205       215     
                                          21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:207
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:207
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       
         Q98H69_RHILO    14 DFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeee.....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhh....eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm B  14 DFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                   |23        33        43        53        63      | 73        83        93       103       113   |   123       133       143       153       163       173       183       193       203       213       
                                  21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:209
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:209
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         
         Q98H69_RHILO    12 TADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......eeeeeee.....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhh...eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm C  12 TADFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                    21        31        41        51        61        71        81        91       101       111     | 121       131       141       151       161       171       181       191       201       211         
                                    21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:211
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:211
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219 
         Q98H69_RHILO    10 GDTADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeee.....eeeeeee.........eeeeeeeee....hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhh...eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm D  10 GDTADFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                    19 |      29        39        49        59        69|       79        89        99       109       119       129       139       149       159       169       179       189       199       209       219 
                                      21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:207
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:207
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       
         Q98H69_RHILO    14 DFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeee.....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhhh..eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm E  14 DFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                   |23        33        43        53        63      | 73        83        93       103       113   |   123       133       143       153       163       173       183       193       203       213       
                                  21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:215
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     
         Q98H69_RHILO     6 PLRDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh......eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeee.....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhhh..eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm F   6 PLRDGDTADFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                    15     |  25        35        45        55        65    |   75        85        95       105       115 |     125       135       145       155       165       175       185       195       205       215     
                                          21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:215
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     
         Q98H69_RHILO     6 PLRDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......eeeeeee.....eeeeeee.........eeeee........hhhhhh....hhhhhhhhhh.......eeeee.....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhh...eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm G   6 PLRDGDTADFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                    15     |  25        35        45        55        65    |   75        85        95       105       115 |     125       135       145       155       165       175       185       195       205       215     
                                          21-MSE                                           70-MSE                                        117-LLP                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:207
 aligned with Q98H69_RHILO | Q98H69 from UniProtKB/TrEMBL  Length:220

    Alignment length:207
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       
         Q98H69_RHILO    14 DFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAMRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------Aminotran_4-3qqmH01 H:30-220                                                                                                                                                                    Pfam domains (1)
           Pfam domains (2) ----------------Aminotran_4-3qqmH02 H:30-220                                                                                                                                                                    Pfam domains (2)
           Pfam domains (3) ----------------Aminotran_4-3qqmH03 H:30-220                                                                                                                                                                    Pfam domains (3)
           Pfam domains (4) ----------------Aminotran_4-3qqmH04 H:30-220                                                                                                                                                                    Pfam domains (4)
           Pfam domains (5) ----------------Aminotran_4-3qqmH05 H:30-220                                                                                                                                                                    Pfam domains (5)
           Pfam domains (6) ----------------Aminotran_4-3qqmH06 H:30-220                                                                                                                                                                    Pfam domains (6)
           Pfam domains (7) ----------------Aminotran_4-3qqmH07 H:30-220                                                                                                                                                                    Pfam domains (7)
           Pfam domains (8) ----------------Aminotran_4-3qqmH08 H:30-220                                                                                                                                                                    Pfam domains (8)
         Sec.struct. author ...eeeeeeee...ee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....eeeeeee.....eeeeeee.........eeeeeeeeee...hhhhhh....hhhhhhhhhh.......eeeeee....eeee...eeeee.....eeee.hhhh...hhhhhhhhhh..eeee..hhhhhh...eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qqm H  14 DFELIETmRWQPGTSFLRFDRHLARLYGSAAELGFACDPQRIAEVLSDALDGARTAmRTRLALARNGDATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHkTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGRAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 220
                                   |23        33        43        53        63      | 73        83        93       103       113   |   123       133       143       153       163       173       183       193       203       213       
                                  21-MSE                                           70-MSE                                        117-LLP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QQM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QQM)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: Aminotran_4] (8)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q98H69_RHILO | Q98H69)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3qqm
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 Related Entries

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