3QOF - JenaLib

Asymmetric Unit (20, 79)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_058963	D	43	E	ATLA1_HUMAN	Polymorphism	17850684	A/B/C/D	D	43	E
02	UniProt	VAR_065508	E	66	Q	ATLA1_HUMAN	Disease (HSN1D)	200314808	A/B/C/D	E	66	Q
03	UniProt	VAR_071874	R	118	Q	ATLA1_HUMAN	Disease (SPG3)	606231265	A/B/C/D	R	118	Q
04	UniProt	VAR_067655	Q	154	E	ATLA1_HUMAN	Disease (SPG3)	---	A/B/C/D	Q	154	E
05	UniProt	VAR_065509	L	157	W	ATLA1_HUMAN	Disease (SPG3)	119476051	A/B/C/D	L	157	W
06	UniProt	VAR_019446	A	161	P	ATLA1_HUMAN	Disease (SPG3)	---	A/B/C/D	A	161	P
07	UniProt	VAR_058964	F	193	C	ATLA1_HUMAN	Polymorphism	17850683	A/B/C/D	F	193	C
08	UniProt	VAR_067656	Y	196	C	ATLA1_HUMAN	Unclassified	---	A/B/C/D	Y	196	C
09	UniProt	VAR_017146	R	217	Q	ATLA1_HUMAN	Disease (SPG3)	119476049	A/B/C/D	R	217	Q
10	UniProt	VAR_017147	R	239	C	ATLA1_HUMAN	Disease (SPG3)	119476046	A/B/C/D	R	239	C
11	UniProt	VAR_019447	H	247	P	ATLA1_HUMAN	Disease (SPG3)	---	A/C/D	H	247	P
12	UniProt	VAR_067657	V	253	I	ATLA1_HUMAN	Disease (SPG3)	864622520	A/B/C/D	V	253	I
13	UniProt	VAR_017148	H	258	R	ATLA1_HUMAN	Disease (SPG3)	119476048	A/B/C/D	H	258	R
14	UniProt	VAR_017149	S	259	Y	ATLA1_HUMAN	Disease (SPG3)	119476047	A/B/C/D	S	259	Y
15	UniProt	VAR_065510	N	355	K	ATLA1_HUMAN	Disease (HSN1D)	---	A/B/C/D	N	355	K
16	UniProt	VAR_065511	M	408	V	ATLA1_HUMAN	Disease (SPG3)	28939094	A/B/C/D	M	408	V
17	UniProt	VAR_067658	F	413	V	ATLA1_HUMAN	Disease (SPG3)	---	A/B/C/D	F	413	V
18	UniProt	VAR_071708	R	415	Q	ATLA1_HUMAN	Disease (SPG3)	397514712	A/B/C/D	R	415	Q
19	UniProt	VAR_065512	R	415	W	ATLA1_HUMAN	Disease (SPG3)	119476050	A/B/C/D	R	415	W
20	UniProt	VAR_071709	R	416	C	ATLA1_HUMAN	Disease (SPG3)	387906941	A/B/C/D	R	416	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (20, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_058963	D	43	E	ATLA1_HUMAN	Polymorphism	17850684	A	D	43	E
02	UniProt	VAR_065508	E	66	Q	ATLA1_HUMAN	Disease (HSN1D)	200314808	A	E	66	Q
03	UniProt	VAR_071874	R	118	Q	ATLA1_HUMAN	Disease (SPG3)	606231265	A	R	118	Q
04	UniProt	VAR_067655	Q	154	E	ATLA1_HUMAN	Disease (SPG3)	---	A	Q	154	E
05	UniProt	VAR_065509	L	157	W	ATLA1_HUMAN	Disease (SPG3)	119476051	A	L	157	W
06	UniProt	VAR_019446	A	161	P	ATLA1_HUMAN	Disease (SPG3)	---	A	A	161	P
07	UniProt	VAR_058964	F	193	C	ATLA1_HUMAN	Polymorphism	17850683	A	F	193	C
08	UniProt	VAR_067656	Y	196	C	ATLA1_HUMAN	Unclassified	---	A	Y	196	C
09	UniProt	VAR_017146	R	217	Q	ATLA1_HUMAN	Disease (SPG3)	119476049	A	R	217	Q
10	UniProt	VAR_017147	R	239	C	ATLA1_HUMAN	Disease (SPG3)	119476046	A	R	239	C
11	UniProt	VAR_019447	H	247	P	ATLA1_HUMAN	Disease (SPG3)	---	A	H	247	P
12	UniProt	VAR_067657	V	253	I	ATLA1_HUMAN	Disease (SPG3)	864622520	A	V	253	I
13	UniProt	VAR_017148	H	258	R	ATLA1_HUMAN	Disease (SPG3)	119476048	A	H	258	R
14	UniProt	VAR_017149	S	259	Y	ATLA1_HUMAN	Disease (SPG3)	119476047	A	S	259	Y
15	UniProt	VAR_065510	N	355	K	ATLA1_HUMAN	Disease (HSN1D)	---	A	N	355	K
16	UniProt	VAR_065511	M	408	V	ATLA1_HUMAN	Disease (SPG3)	28939094	A	M	408	V
17	UniProt	VAR_067658	F	413	V	ATLA1_HUMAN	Disease (SPG3)	---	A	F	413	V
18	UniProt	VAR_071708	R	415	Q	ATLA1_HUMAN	Disease (SPG3)	397514712	A	R	415	Q
19	UniProt	VAR_065512	R	415	W	ATLA1_HUMAN	Disease (SPG3)	119476050	A	R	415	W
20	UniProt	VAR_071709	R	416	C	ATLA1_HUMAN	Disease (SPG3)	387906941	A	R	416	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (19, 19)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_058963	D	43	E	ATLA1_HUMAN	Polymorphism	17850684	B	D	43	E
02	UniProt	VAR_065508	E	66	Q	ATLA1_HUMAN	Disease (HSN1D)	200314808	B	E	66	Q
03	UniProt	VAR_071874	R	118	Q	ATLA1_HUMAN	Disease (SPG3)	606231265	B	R	118	Q
04	UniProt	VAR_067655	Q	154	E	ATLA1_HUMAN	Disease (SPG3)	---	B	Q	154	E
05	UniProt	VAR_065509	L	157	W	ATLA1_HUMAN	Disease (SPG3)	119476051	B	L	157	W
06	UniProt	VAR_019446	A	161	P	ATLA1_HUMAN	Disease (SPG3)	---	B	A	161	P
07	UniProt	VAR_058964	F	193	C	ATLA1_HUMAN	Polymorphism	17850683	B	F	193	C
08	UniProt	VAR_067656	Y	196	C	ATLA1_HUMAN	Unclassified	---	B	Y	196	C
09	UniProt	VAR_017146	R	217	Q	ATLA1_HUMAN	Disease (SPG3)	119476049	B	R	217	Q
10	UniProt	VAR_017147	R	239	C	ATLA1_HUMAN	Disease (SPG3)	119476046	B	R	239	C
12	UniProt	VAR_067657	V	253	I	ATLA1_HUMAN	Disease (SPG3)	864622520	B	V	253	I
13	UniProt	VAR_017148	H	258	R	ATLA1_HUMAN	Disease (SPG3)	119476048	B	H	258	R
14	UniProt	VAR_017149	S	259	Y	ATLA1_HUMAN	Disease (SPG3)	119476047	B	S	259	Y
15	UniProt	VAR_065510	N	355	K	ATLA1_HUMAN	Disease (HSN1D)	---	B	N	355	K
16	UniProt	VAR_065511	M	408	V	ATLA1_HUMAN	Disease (SPG3)	28939094	B	M	408	V
17	UniProt	VAR_067658	F	413	V	ATLA1_HUMAN	Disease (SPG3)	---	B	F	413	V
18	UniProt	VAR_071708	R	415	Q	ATLA1_HUMAN	Disease (SPG3)	397514712	B	R	415	Q
19	UniProt	VAR_065512	R	415	W	ATLA1_HUMAN	Disease (SPG3)	119476050	B	R	415	W
20	UniProt	VAR_071709	R	416	C	ATLA1_HUMAN	Disease (SPG3)	387906941	B	R	416	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (20, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_058963	D	43	E	ATLA1_HUMAN	Polymorphism	17850684	C	D	43	E
02	UniProt	VAR_065508	E	66	Q	ATLA1_HUMAN	Disease (HSN1D)	200314808	C	E	66	Q
03	UniProt	VAR_071874	R	118	Q	ATLA1_HUMAN	Disease (SPG3)	606231265	C	R	118	Q
04	UniProt	VAR_067655	Q	154	E	ATLA1_HUMAN	Disease (SPG3)	---	C	Q	154	E
05	UniProt	VAR_065509	L	157	W	ATLA1_HUMAN	Disease (SPG3)	119476051	C	L	157	W
06	UniProt	VAR_019446	A	161	P	ATLA1_HUMAN	Disease (SPG3)	---	C	A	161	P
07	UniProt	VAR_058964	F	193	C	ATLA1_HUMAN	Polymorphism	17850683	C	F	193	C
08	UniProt	VAR_067656	Y	196	C	ATLA1_HUMAN	Unclassified	---	C	Y	196	C
09	UniProt	VAR_017146	R	217	Q	ATLA1_HUMAN	Disease (SPG3)	119476049	C	R	217	Q
10	UniProt	VAR_017147	R	239	C	ATLA1_HUMAN	Disease (SPG3)	119476046	C	R	239	C
11	UniProt	VAR_019447	H	247	P	ATLA1_HUMAN	Disease (SPG3)	---	C	H	247	P
12	UniProt	VAR_067657	V	253	I	ATLA1_HUMAN	Disease (SPG3)	864622520	C	V	253	I
13	UniProt	VAR_017148	H	258	R	ATLA1_HUMAN	Disease (SPG3)	119476048	C	H	258	R
14	UniProt	VAR_017149	S	259	Y	ATLA1_HUMAN	Disease (SPG3)	119476047	C	S	259	Y
15	UniProt	VAR_065510	N	355	K	ATLA1_HUMAN	Disease (HSN1D)	---	C	N	355	K
16	UniProt	VAR_065511	M	408	V	ATLA1_HUMAN	Disease (SPG3)	28939094	C	M	408	V
17	UniProt	VAR_067658	F	413	V	ATLA1_HUMAN	Disease (SPG3)	---	C	F	413	V
18	UniProt	VAR_071708	R	415	Q	ATLA1_HUMAN	Disease (SPG3)	397514712	C	R	415	Q
19	UniProt	VAR_065512	R	415	W	ATLA1_HUMAN	Disease (SPG3)	119476050	C	R	415	W
20	UniProt	VAR_071709	R	416	C	ATLA1_HUMAN	Disease (SPG3)	387906941	C	R	416	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (20, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_058963	D	43	E	ATLA1_HUMAN	Polymorphism	17850684	D	D	43	E
02	UniProt	VAR_065508	E	66	Q	ATLA1_HUMAN	Disease (HSN1D)	200314808	D	E	66	Q
03	UniProt	VAR_071874	R	118	Q	ATLA1_HUMAN	Disease (SPG3)	606231265	D	R	118	Q
04	UniProt	VAR_067655	Q	154	E	ATLA1_HUMAN	Disease (SPG3)	---	D	Q	154	E
05	UniProt	VAR_065509	L	157	W	ATLA1_HUMAN	Disease (SPG3)	119476051	D	L	157	W
06	UniProt	VAR_019446	A	161	P	ATLA1_HUMAN	Disease (SPG3)	---	D	A	161	P
07	UniProt	VAR_058964	F	193	C	ATLA1_HUMAN	Polymorphism	17850683	D	F	193	C
08	UniProt	VAR_067656	Y	196	C	ATLA1_HUMAN	Unclassified	---	D	Y	196	C
09	UniProt	VAR_017146	R	217	Q	ATLA1_HUMAN	Disease (SPG3)	119476049	D	R	217	Q
10	UniProt	VAR_017147	R	239	C	ATLA1_HUMAN	Disease (SPG3)	119476046	D	R	239	C
11	UniProt	VAR_019447	H	247	P	ATLA1_HUMAN	Disease (SPG3)	---	D	H	247	P
12	UniProt	VAR_067657	V	253	I	ATLA1_HUMAN	Disease (SPG3)	864622520	D	V	253	I
13	UniProt	VAR_017148	H	258	R	ATLA1_HUMAN	Disease (SPG3)	119476048	D	H	258	R
14	UniProt	VAR_017149	S	259	Y	ATLA1_HUMAN	Disease (SPG3)	119476047	D	S	259	Y
15	UniProt	VAR_065510	N	355	K	ATLA1_HUMAN	Disease (HSN1D)	---	D	N	355	K
16	UniProt	VAR_065511	M	408	V	ATLA1_HUMAN	Disease (SPG3)	28939094	D	M	408	V
17	UniProt	VAR_067658	F	413	V	ATLA1_HUMAN	Disease (SPG3)	---	D	F	413	V
18	UniProt	VAR_071708	R	415	Q	ATLA1_HUMAN	Disease (SPG3)	397514712	D	R	415	Q
19	UniProt	VAR_065512	R	415	W	ATLA1_HUMAN	Disease (SPG3)	119476050	D	R	415	W
20	UniProt	VAR_071709	R	416	C	ATLA1_HUMAN	Disease (SPG3)	387906941	D	R	416	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:404
 aligned with ATLA1_HUMAN | Q8WXF7 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:408
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430        
          ATLA1_HUMAN    31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDS 438
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee...eeeehhhhhhhhhh........eeeeeee.....hhhhhhhhhhhhhhh..............................ee....eeee.....eeeeeeee...............hhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhh.----..............eeeeeeee....hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ------------E----------------------Q---------------------------------------------------Q-----------------------------------E--W---P-------------------------------C--C--------------------Q---------------------C-------P-----I----RY-----------------------------------------------------------------------------------------------K----------------------------------------------------V----V-QC---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------G_GB1_RHD3  PDB: A:64-309 UniProt: 64-309                                                                                                                                                                                                             --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qof A  31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKV----HEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDS 438
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 |    |250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430        
                                                                                                                                                                                                                                             242  247

Chain B from PDB  Type:PROTEIN  Length:397
 aligned with ATLA1_HUMAN | Q8WXF7 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:402
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
          ATLA1_HUMAN    31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee...eeeehhhhhhhhhhhhhhhh.eeeeeeeeee...hhhhhhhhhhhhhhh............................eeeee...eeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhh.-----....hhhhhh...eeeeeeee....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...... Sec.struct. author
             SAPs(SNPs) (1) ------------E----------------------Q---------------------------------------------------Q-----------------------------------E--W---P-------------------------------C--C--------------------Q---------------------C-------------I----RY-----------------------------------------------------------------------------------------------K----------------------------------------------------V----V-QC---------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------G_GB1_RHD3  PDB: B:64-309 UniProt: 64-309                                                                                                                                                                                                             --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qof B  31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKV-----EELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 |     250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
                                                                                                                                                                                                                                             242   248

Chain C from PDB  Type:PROTEIN  Length:405
 aligned with ATLA1_HUMAN | Q8WXF7 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:409
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430         
          ATLA1_HUMAN    31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK 439
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...eeeehhhhhhhhhh........eeeeeeee....hhhhhhhhhhhhhhh............................eeeee...eeee.....eeeeeeeeee...........hhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhh.----.....hhhhhh...eeeeeeee....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........ee..ee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------E----------------------Q---------------------------------------------------Q-----------------------------------E--W---P-------------------------------C--C--------------------Q---------------------C-------P-----I----RY-----------------------------------------------------------------------------------------------K----------------------------------------------------V----V-QC----------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W------------------------ SAPs(SNPs) (2)
                    PROSITE ---------------------------------G_GB1_RHD3  PDB: C:64-309 UniProt: 64-309                                                                                                                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qof C  31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKV----HEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK 439
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 |    |250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430         
                                                                                                                                                                                                                                             242  247

Chain D from PDB  Type:PROTEIN  Length:398
 aligned with ATLA1_HUMAN | Q8WXF7 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:402
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
          ATLA1_HUMAN    31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ------------GBP-3qofD01 D:43-314                                                                                                                                                                                                                                                            ---------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------GBP-3qofD02 D:43-314                                                                                                                                                                                                                                                            ---------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------GBP-3qofD03 D:43-314                                                                                                                                                                                                                                                            ---------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------GBP-3qofD04 D:43-314                                                                                                                                                                                                                                                            ---------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeeee.....eeehhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh..............................eeee...eeee.....eeeeeeeeee.............hhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhh..----..............eeeeeeee....hhhhhh......hhhhhhhhhhhhhhhhhhhh.........ee..ee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------E----------------------Q---------------------------------------------------Q-----------------------------------E--W---P-------------------------------C--C--------------------Q---------------------C-------P-----I----RY-----------------------------------------------------------------------------------------------K----------------------------------------------------V----V-QC---------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------G_GB1_RHD3  PDB: D:64-309 UniProt: 64-309                                                                                                                                                                                                             --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qof D  31 KAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKV----HEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 |    |250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
                                                                                                                                                                                                                                             242  247

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (19, 19)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ATLA1_HUMAN | Q8WXF7)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007409	axonogenesis	De novo generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells. Refers to the morphogenesis or creation of shape or form of the developing axon.
	GO:0007029	endoplasmic reticulum organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000137	Golgi cis cisterna	The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (20, 79)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (19, 19)

Visualization

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Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File