3QH8 - JenaLib

Title :   CRYSTAL STRUCTURE OF A BETA-LACTAMASE-LIKE PROTEIN BOUND TO AMP FROM BRUCELLA MELITENSIS, LONG WAVELENGTH SYNCHROTRON DATA

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   25 Jan 11 (Deposition) - 09 Feb 11 (Release) - 21 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Ssgcid, Beta-Lactamase Like, Brucella Melitensis, Amp, Mn Centre, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Abendroth, B. Sankaran, T. E. Edwards, A. S. Gardberg, S. Dieterich J. Bhandari, A. J. Napuli, W. C. Van Voorhis, B. L. Staker, P. J. Myler, L. J. Stewart
Crystal Structure Of A Beta-Lactamase-Like Protein Bound To Amp From Brucella Melitensis, Long Wavelength Synchrotron Data
Acta Crystallogr. , Sect. F V. 67 1106 2011
PubMed-ID: 21904058 | Reference-DOI: 10.1107/S1744309111010220

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:90 , HIS A:91 , ASP A:188 , HIS A:241 , MN A:301 , AMP A:303 , HOH A:340	BINDING SITE FOR RESIDUE MN A 300
2	AC2	SOFTWARE	HIS A:86 , HIS A:88 , HIS A:170 , ASP A:188 , MN A:300 , AMP A:303 , HOH A:340	BINDING SITE FOR RESIDUE MN A 301
3	AC3	SOFTWARE	MET A:252 , THR A:255 , PRO A:256 , VAL A:259 , HOH A:545	BINDING SITE FOR RESIDUE K A 302
4	AC4	SOFTWARE	SER A:18 , PRO A:87 , HIS A:88 , ALA A:89 , ASP A:90 , ASP A:96 , ARG A:99 , TYR A:127 , TYR A:137 , HIS A:170 , ASP A:188 , HIS A:219 , HIS A:241 , MN A:300 , MN A:301 , EDO A:305 , HOH A:307 , HOH A:340 , HOH A:344 , HOH A:426 , HOH A:433 , HOH A:484 , HOH A:516 , HOH A:588	BINDING SITE FOR RESIDUE AMP A 303
5	AC5	SOFTWARE	HIS A:88 , SER A:135 , ASP A:172 , AMP A:303 , HOH A:332	BINDING SITE FOR RESIDUE EDO A 305
6	AC6	SOFTWARE	ARG A:23 , LYS A:30 , GLN A:212 , HIS A:216 , HIS A:243 , HOH A:338 , HOH A:476 , HOH A:598 , HOH A:599	BINDING SITE FOR RESIDUE TLA A 304

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:272
 aligned with Q2YQ74_BRUA2 | Q2YQ74 from UniProtKB/TrEMBL  Length:272

    Alignment length:272
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270  
         Q2YQ74_BRUA2     1 MTSPRNCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPHHVEPGYDGLRFEVAV 272
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------Lactamase_B_2-3qh8A01 A:57-242                                                                                                                                                            ------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeee....................hhhhh....eeeeeee.....eeeeee....hhhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhh...........eeeee......eee......eeeeeeeeee..eeeeeeee..eeee......hhhhhhhhh...eeeee...........hhhhhhhhhhhhh..eeeee......hhhhhhhhh...eee....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qh8 A   1 MTSPRNCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPHHVEPGYDGLRFEVAV 272
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

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	Ligands, Modified Residues, Ions
		AMP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Val A:21 - Pro A:22	[ RasMol ]

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