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(-) Description

Title :  CRYSTAL STRUCTURE OF ESTERASE LIPW FROM MYCOBACTERIUM MARINUM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  25 Jan 11  (Deposition) - 09 Feb 11  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Mycobacterium, Tuberculosis, Marinum, Ortholog, Lipw, Esterase, Heroin Esterase, Multidrug Resistance, Tb, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Mckary, J. Abendroth, T. E. Edwards, R. J. Johnson
Structural Basis For The Strict Substrate Selectivity Of Th Mycobacterial Hydrolase Lipw.
Biochemistry V. 95 142 2016
PubMed-ID: 27936614  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B01057
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ESTERASE LIPW
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LIPW, MMAR_0404
    Organism Scientific: MYCOBACTERIUM MARINUM
    Organism Taxid: 216594
    Strain: ATCC BAA-535 / M

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3QH4)

(-) Sites  (0, 0)

(no "Site" information available for 3QH4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QH4)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Thr A:79 -Pro A:80
2Ala A:123 -Pro A:124
3Tyr A:128 -Pro A:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QH4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QH4)

(-) Exons   (0, 0)

(no "Exon" information available for 3QH4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with B2HLX2_MYCMM | B2HLX2 from UniProtKB/TrEMBL  Length:313

    Alignment length:314
                              1                                                                                                                                                                                                                                                                                                                       
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308    
         B2HLX2_MYCMM     - --MTQPEAVDRLDPLLRAVATARIDFTAESILTIRESMNQRRREAAATETAAAGVAVADDVVTGEAGRPVPVRIYRAAPTPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQLAGLPATLITCGEIDPFRDEVLDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFYP 312
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------Abhydrolase_3-3qh4A01 A:84-288                                                                                                                                                                               ------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.....eeeeeeee.....eeeeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhhhh.......eeeee........hhhhhhh......hhhhhhhhhhhhhh........hhhhh........eeeeeeee..hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qh4 A   0 SMVTQPEAVDRLDPLLRAVATARIDFTAESILTIRESMNQRRREAAATETAAAGVAVADDVVTGEAGRPVPVRIYRAAPTPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQLAGLPATLITCGEIDPFRDEVLDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFYP 313
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QH4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QH4)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (B2HLX2_MYCMM | B2HLX2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  Cis Peptide Bonds
    Ala A:123 - Pro A:124   [ RasMol ]  
    Thr A:79 - Pro A:80   [ RasMol ]  
    Tyr A:128 - Pro A:129   [ RasMol ]  
 

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