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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE CARBOHYDRATE BINDING PROTEIN (PA1324) FROM PSEUDOMONAS AERUGINOSA AT 2.61 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  20 Jan 11  (Deposition) - 02 Mar 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Suramin Binding, Heparin Binding, Possible Carbohydrate Transporter, Biofilm Formation, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Carbohydrate- Binding Protein, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Carbohydrate Binding Protei (Pa1324) From Pseudomonas Aeruginosa At 2. 61 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CARBOHYDRATE BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 22-170
    Gene: PA1324
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric Unit (5, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE1Mod. Amino AcidSELENOMETHIONINE
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE1Ligand/IonTRIETHYLENE GLYCOL
5SO41Ligand/IonSULFATE ION
Biological Unit 1 (5, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE1Mod. Amino AcidSELENOMETHIONINE
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE1Ligand/IonTRIETHYLENE GLYCOL
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (5, 21)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PEG6Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE3Ligand/IonTRIETHYLENE GLYCOL
5SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:159 , GLY A:160 , GOL A:201BINDING SITE FOR RESIDUE SO4 A 200
2AC2SOFTWAREGLY A:160 , SER A:161 , GLN A:162 , SO4 A:200BINDING SITE FOR RESIDUE GOL A 201
3AC3SOFTWARELEU A:52 , THR A:53 , ASP A:87 , GLU A:148 , GLY A:149 , ARG A:170BINDING SITE FOR RESIDUE GOL A 202
4AC4SOFTWAREGLU A:110 , ALA A:111 , THR A:112 , PHE A:119 , ASP A:120BINDING SITE FOR RESIDUE PEG A 203
5AC5SOFTWARETHR A:65 , GLU A:134 , LEU A:135 , THR A:136BINDING SITE FOR RESIDUE PEG A 204
6AC6SOFTWAREALA A:72 , TYR A:130BINDING SITE FOR RESIDUE PGE A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QEC)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
 aligned with Q9I420_PSEAE | Q9I420 from UniProtKB/TrEMBL  Length:170

    Alignment length:145
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165     
         Q9I420_PSEAE    26 DLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR 170
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeeeeeeeee.....eee....eeeeee.hhhhhhhhhhhh...................hhhhheeee.....eeeeeee..eeeeeeeeeeeeee....eeeeeeeeeeeeee.......eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qec A  26 DLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYmKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR 170
                                    35        45        55        65        75|       85        95       105       115       125       135       145       155       165     
                                                                             76-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QEC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QEC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QEC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QEC)

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