3Q94 - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'

Authors :   K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Str Genomics Of Infectious Diseases (Csgid)

Date :   07 Jan 11 (Deposition) - 26 Jan 11 (Release) - 26 Jan 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Barrel, Cytoplasmic, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Fructose 1, 6-Bisphosphate Aldolase From Bacillus Anthracis Str. 'Ames Ancestor'.
To Be Published
PubMed: search

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE, CLASS II
	Chains	:	A, B
	EC Number	:	4.1.2.13
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FBA2, BAS5184, BA_5580, GBAA5580, GBAA_5580
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	261594
	Strain	:	AMES ANCESTOR
	Synonym	:	FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 36)

No.	Name	Count	Type	Full Name
1	13P	2	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	ACT	4	Ligand/Ion	ACETATE ION
3	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
4	NA	2	Ligand/Ion	SODIUM ION
5	ZN	10	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 24)

No.	Name	Count	Type	Full Name
1	13P	2	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	ACT	4	Ligand/Ion	ACETATE ION
3	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
4	NA	-1	Ligand/Ion	SODIUM ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 48)

No.	Name	Count	Type	Full Name
1	13P	4	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	ACT	8	Ligand/Ion	ACETATE ION
3	MSE	36	Mod. Amino Acid	SELENOMETHIONINE
4	NA	-1	Ligand/Ion	SODIUM ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:86 , HIS A:181 , HIS A:209 , 13P A:321	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	SER A:88 , HIS A:111 , HOH A:466	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	HIS A:56 , ASP A:147 , HOH B:429	BINDING SITE FOR RESIDUE ZN A 303
04	AC4	SOFTWARE	GLU A:114 , HIS A:163 , HOH A:459	BINDING SITE FOR RESIDUE ZN A 304
05	AC5	SOFTWARE	VAL A:180 , GLY A:182 , TYR A:184 , GLY A:210 , THR A:212 , 13P A:321	BINDING SITE FOR RESIDUE NA A 310
06	AC6	SOFTWARE	ASN A:24 , ASP A:85 , HIS A:86 , VAL A:180 , HIS A:181 , GLY A:182 , HIS A:209 , GLY A:210 , GLY A:211 , THR A:212 , ASN A:231 , VAL A:232 , ASN A:233 , THR A:234 , ZN A:301 , NA A:310 , HOH A:340 , HOH A:424	BINDING SITE FOR RESIDUE 13P A 321
07	AC7	SOFTWARE	GLU A:235 , GLU A:239 , GLU B:15	BINDING SITE FOR RESIDUE ZN A 286
08	AC8	SOFTWARE	TYR A:155 , ASN A:189 , GLU A:194	BINDING SITE FOR RESIDUE ACT A 287
09	AC9	SOFTWARE	GLU A:72 , ASN A:75 , LYS B:61	BINDING SITE FOR RESIDUE ACT A 288
10	BC1	SOFTWARE	GLU A:220 , HOH A:352 , GLU B:196 , HOH B:366 , HOH B:430	BINDING SITE FOR RESIDUE ZN B 305
11	BC2	SOFTWARE	HIS B:86 , HIS B:181 , HIS B:209 , 13P B:321	BINDING SITE FOR RESIDUE ZN B 301
12	BC3	SOFTWARE	HOH A:315 , HIS B:56 , HOH B:314	BINDING SITE FOR RESIDUE ZN B 302
13	BC4	SOFTWARE	GLU A:196 , ASP A:200 , HIS B:111 , GLU B:115	BINDING SITE FOR RESIDUE ZN B 303
14	BC5	SOFTWARE	HIS B:110	BINDING SITE FOR RESIDUE ZN B 286
15	BC6	SOFTWARE	VAL B:180 , GLY B:182 , TYR B:184 , GLY B:210 , THR B:212 , 13P B:321	BINDING SITE FOR RESIDUE NA B 311
16	BC7	SOFTWARE	ASP B:85 , HIS B:86 , VAL B:180 , HIS B:181 , GLY B:182 , HIS B:209 , GLY B:210 , GLY B:211 , THR B:212 , ASN B:231 , VAL B:232 , ASN B:233 , THR B:234 , ZN B:301 , NA B:311 , HOH B:437	BINDING SITE FOR RESIDUE 13P B 321
17	BC8	SOFTWARE	GLU B:41 , ASN B:282	BINDING SITE FOR RESIDUE ACT B 287
18	BC9	SOFTWARE	LYS A:61 , GLU B:72	BINDING SITE FOR RESIDUE ACT B 288

(no "SS Bond" information available for 3Q94)

(no "Cis Peptide Bond" information available for 3Q94)

(no "SAP(SNP)/Variant" information available for 3Q94)

(no "PROSITE Motif" information available for 3Q94)

(no "Exon" information available for 3Q94)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:285
 aligned with Q81JW4_BACAN | Q81JW4 from UniProtKB/TrEMBL  Length:285

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         Q81JW4_BACAN     1 MPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285
               SCOP domains d3q94a_ A: automated matches                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh...eeeeeehhhhhhh.hhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhh...hhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhh..eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q94 A   1 mPLVSmKEmLNKALEGKYAVGQFNmNNLEWTQAILAAAEEEKSPVILGVSEGAARHmTGFKTVVAmVKALIEEmNITVPVAIHLDHGSSFEKCKEAIDAGFTSVmIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEmEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285
                            |    |  10        20    |   30        40        50      | 60     |  70   |    80        90       100    |  110       120       130       140       150       160       170       180       190    |  200       210       220       230       240       250       260       270       280     
                            |    |  |              25-MSE                          57-MSE   66-MSE  74-MSE                        105-MSE                                                                                   195-MSE                                                                                      
                            1-MSE|  |                                                                                                                                                                                                                                                                                    
                                 6-MSE                                                                                                                                                                                                                                                                                   
                                    9-MSE

Chain B from PDB  Type:PROTEIN  Length:277
 aligned with Q81JW4_BACAN | Q81JW4 from UniProtKB/TrEMBL  Length:285

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         Q81JW4_BACAN     1 MPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285
               SCOP domains d3q94b_ B: automated matches                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -F_bP_aldolase-3q94B01 B:2-285                                                                                                                                                                                                                                                                Pfam domains (1)
           Pfam domains (2) -F_bP_aldolase-3q94B02 B:2-285                                                                                                                                                                                                                                                                Pfam domains (2)
         Sec.struct. author .....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeehhhhhhhh.hhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhh...eeeeee.....--------.....hhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhh..eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q94 B   1 mPLVSmKEmLNKALEGKYAVGQFNmNNLEWTQAILAAAEEEKSPVILGVSEGAARHmTGFKTVVAmVKALIEEmNITVPVAIHLDHGSSFEKCKEAIDAGFTSVmIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG--------GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEmEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285
                            |    |  10        20    |   30        40        50      | 60     |  70   |    80        90       100    |  110       120       130       140  |      - |     160       170       180       190    |  200       210       220       230       240       250       260       270       280     
                            1-MSE|  |              25-MSE                          57-MSE   66-MSE  74-MSE                        105-MSE                               143      152                                        195-MSE                                                                                      
                                 6-MSE                                                                                                                                                                                                                                                                                   
                                    9-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: automated matches (113)

Protein domain: automated matches (113)

Bacillus anthracis [TaxId: 261594] (1)

1a	d3q94a_	A:
1b	d3q94b_	B:

(no "CATH Domain" information available for 3Q94)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: F_bP_aldolase (7)

Bacillus anthracis (1)

1a	F_bP_aldolase-3q94B01	B:2-285
1b	F_bP_aldolase-3q94B02	B:2-285

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q81JW4_BACAN | Q81JW4)

molecular function
	GO:0016832	aldehyde-lyase activity	Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004332	fructose-bisphosphate aldolase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030388	fructose 1,6-bisphosphate metabolic process	The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.

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	Cis Peptide Bonds
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	3q94
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Description

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Ligands, Modified Residues, Ions (5, 36)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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