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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE PROTEIN SSP2350 FROM STAPHYLOCOCCUS SAPROPHYTICUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SYR116
 
Authors :  J. Seetharaman, Y. Chen, D. Wang, C. Ciccosanti, S. Sahdev, R. Nair, B. R T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong Northeast Structural Genomics Consortium (Nesg)
Date :  31 Dec 10  (Deposition) - 06 Apr 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  E,H  (1x)
Biol. Unit 4:  F,G  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Staphylococcus Saprophyticus, Structure Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, Y. Chen, D. Wang, C. Ciccosanti, S. Sahdev, R. Nair, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt L. Tong, Northeast Structural Genomics Consortium (Nesg)
X-Ray Crystal Structure Of The Protein Ssp2350 From Staphylococcus Saprophyticus, Northeast Structural Genomics Consortium Target Syr116
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SSP2350
    Organism Scientific: STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SAPROPHYTICUS
    Organism Taxid: 342451
    Strain: ATCC 15305 / DSM 20229

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A  D    
Biological Unit 2 (1x):  BC     
Biological Unit 3 (1x):     E  H
Biological Unit 4 (1x):      FG 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3Q6A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q6A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q6A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q6A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q6A)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q6A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeeeehhhhe-eeeeeeeee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a A   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDA-LNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50  | |   60        70        80        90       100       110    |  120       130     
                            |     7-MSE                                        53 |                                                         115-MSE                
                            1-MSE                                                55                                                                                


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeeeehhhheeeeeeeeeee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a B   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130     
                            1-MSE 7-MSE                                                                                                     115-MSE                


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeeee....eeeeee..eee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a C   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130     
                            1-MSE 7-MSE                                                                                                     115-MSE                


Chain D from PDB  Type:PROTEIN  Length:135
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeeee....eeeeee..eee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a D   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130     
                            1-MSE 7-MSE                                                                                                     115-MSE                


Chain E from PDB  Type:PROTEIN  Length:134
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL 134
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeee......eeeee..eee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a E   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAIL 134
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130    
                            1-MSE 7-MSE                                                                                                     115-MSE               


Chain F from PDB  Type:PROTEIN  Length:135
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeee......eeeeeeeeee...eeeeee..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a F   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130     
                            1-MSE 7-MSE                                                                                                     115-MSE                


Chain G from PDB  Type:PROTEIN  Length:134
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL 134
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhhh.....ee........eeeee.......eeee..eee...eeeeee..eeeeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a G   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAIL 134
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130    
                            1-MSE 7-MSE                                                                                                     115-MSE               


Chain H from PDB  Type:PROTEIN  Length:135
 aligned with Q49US3_STAS1 | Q49US3 from UniProtKB/TrEMBL  Length:134

    Alignment length:135
                                                                                                                                                               134 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   | 
         Q49US3_STAS1     1 MDIITKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGVTIRAAIL-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------AHSA1-3q6aH01 H:10-124                                                                                             ----------- Pfam domains (1)
           Pfam domains (2) ---------AHSA1-3q6aH02 H:10-124                                                                                             ----------- Pfam domains (2)
           Pfam domains (3) ---------AHSA1-3q6aH03 H:10-124                                                                                             ----------- Pfam domains (3)
           Pfam domains (4) ---------AHSA1-3q6aH04 H:10-124                                                                                             ----------- Pfam domains (4)
           Pfam domains (5) ---------AHSA1-3q6aH05 H:10-124                                                                                             ----------- Pfam domains (5)
           Pfam domains (6) ---------AHSA1-3q6aH06 H:10-124                                                                                             ----------- Pfam domains (6)
           Pfam domains (7) ---------AHSA1-3q6aH07 H:10-124                                                                                             ----------- Pfam domains (7)
           Pfam domains (8) ---------AHSA1-3q6aH08 H:10-124                                                                                             ----------- Pfam domains (8)
         Sec.struct. author ..eeeeeee..hhhhhhhhhhh..hhhhh...ee........eeeeee....eeeeeeeeeee...eeeeee..eeeeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q6a H   1 mDIITKmQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYDAELNINIERVEDNQLIAFTWGAHPITIQFEESEAGTVVTTTEKDFDTQDVKQLLGQKEGWVYmLSCLKVYLEHGVTIRAAILL 135
                            |     | 10        20        30        40        50        60        70        80        90       100       110    |  120       130     
                            1-MSE 7-MSE                                                                                                     115-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q6A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q6A)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q49US3_STAS1 | Q49US3)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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