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(-) Description

Title :  CRYSTAL STRUCTURE OF DVL1-DIX(Y17D) MUTANT
 
Authors :  Q. J. Dan, L. Chen, Y. Y. Zhang, Y. T. Liu, J. W. Wu
Date :  14 Dec 10  (Deposition) - 29 Dec 10  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.87
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Dix Domain, Oligomerization, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. T. Liu, Q. J. Dan, J. W. Wang, Y. G. Feng, L. Chen, J. Liang, Q. X. Li, S. C. Lin, Z. X. Wang, J. W. Wu
Molecular Basis Of Wnt Activation Via The Dix-Domain Protei Ccd1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentDIX DOMAIN
    GeneDVL1, DVL
    MutationYES
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymDISHEVELLED-1, DSH HOMOLOG 1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3PZ8)

(-) Sites  (0, 0)

(no "Site" information available for 3PZ8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PZ8)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gln B:54 -Asp B:55
2Asp D:11 -Glu D:12
3His F:43 -Ala F:44
4Ala G:24 -Pro G:25
5Asp H:66 -Asn H:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PZ8)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  2B:4-85
F:4-84
Biological Unit 1 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  1B:4-85
-
Biological Unit 3 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-
Biological Unit 4 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-
Biological Unit 5 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  1-
F:4-84
Biological Unit 7 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-
Biological Unit 8 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DIXPS50841 DIX domain profile.DVL1_MOUSE1-85
 
  0-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3PZ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:82
                                    12        22        32        42        52        62        72        82  
            DVL1_MOUSE    3 ETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......eeeee.......hhhhhhhh....hhhhh..eeeeee...eeeeee..............eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                          PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3pz8 A  3 DTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
                                    12        22        32        42        52        62        72        82  

Chain B from PDB  Type:PROTEIN  Length:85
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:86
                             1                                                                                    
                             |       9        19        29        39        49        59        69        79      
            DVL1_MOUSE    - -MAETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLAE 85
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..-....eeeee..hhhhhhhhhhhh.....hhh.eeeeeeeee..eeeeeeee........hhhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -DIX  PDB: B:4-85 UniProt: 1-85                                                        PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  3pz8 B  0 PHMDTKIIYHMD-EETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLAE 85
                                     9 | |    19        29        39        49        59        69        79      
                                      11 |                                                                        
                                        13                                                                        

Chain C from PDB  Type:PROTEIN  Length:81
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:82
                                    12        22        32        42        52        62        72        82  
            DVL1_MOUSE    3 ETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..-....eeeee.......hhhhhhhh....hhh.eeeeeeeee...eeeeee..............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                          PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3pz8 C  3 DTKIIYHMD-EETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
                                    |-|       22        32        42        52        62        72        82  
                                   11 |                                                                       
                                     13                                                                       

Chain D from PDB  Type:PROTEIN  Length:83
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
            DVL1_MOUSE    2 AETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeee.......hhhhhhhhh........eeeeeeee...eeeeeee.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                           PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  3pz8 D  2 MDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
                                    11        21        31        41        51        61        71        81   

Chain E from PDB  Type:PROTEIN  Length:83
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:83
                                    11        21        31        41        51        61        71        81   
            DVL1_MOUSE    2 AETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeee.......hhhhhhhh....hhhhheeeeeeee...eeeeeee............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                           PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  3pz8 E  2 MDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
                                    11        21        31        41        51        61        71        81   

Chain F from PDB  Type:PROTEIN  Length:85
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:85
                             1                                                                                   
                             |       9        19        29        39        49        59        69        79     
            DVL1_MOUSE    - -MAETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee......eeeee..hhhhhhhhhhhhhh.......eeeeeeeee...eeeeeee.............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -DIX  PDB: F:4-84 UniProt: 1-85                                                       PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                  3pz8 F  0 PHMDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLA 84
                                     9        19        29        39        49        59        69        79     

Chain G from PDB  Type:PROTEIN  Length:80
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:81
                                    12        22        32        42        52        62        72        82 
            DVL1_MOUSE    3 ETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVL 83
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eeeee.......hhhhhhh......-...eeeeeeee...eeeeeee........hhhhheeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                         PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  3pz8 G  3 DTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRP-HAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVL 83
                                    12        22        32        |-|       52        62        72        82 
                                                                 41 |                                        
                                                                   43                                        

Chain H from PDB  Type:PROTEIN  Length:81
 aligned with DVL1_MOUSE | P51141 from UniProtKB/Swiss-Prot  Length:695

    Alignment length:84
                                    12        22        32        42        52        62        72        82    
            DVL1_MOUSE    3 ETKIIYHMDEEETPYLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSWLVLAEG 86
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -DIX-3pz8  H01 H:4-85                                                              - Pfam domains (1)
           Pfam domains (2) -DIX-3pz8  H02 H:4-85                                                              - Pfam domains (2)
           Pfam domains (3) -DIX-3pz8  H03 H:4-85                                                              - Pfam domains (3)
           Pfam domains (4) -DIX-3pz8  H04 H:4-85                                                              - Pfam domains (4)
           Pfam domains (5) -DIX-3pz8  H05 H:4-85                                                              - Pfam domains (5)
           Pfam domains (6) -DIX-3pz8  H06 H:4-85                                                              - Pfam domains (6)
           Pfam domains (7) -DIX-3pz8  H07 H:4-85                                                              - Pfam domains (7)
           Pfam domains (8) -DIX-3pz8  H08 H:4-85                                                              - Pfam domains (8)
         Sec.struct. author .eeeee...--...eeeee............hhhhh......eeeeeeeee...eeeee...-..........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE DIX  PDB: - UniProt: 1-85                                                          - PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  3pz8 H  3 DTKIIYHMD--ETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIF-DNAKLPCFNGRVVSWLVLAEG 86
                                    |- |      22        32        42        52        62 | |    72        82    
                                   11 14                                                64 |                    
                                                                                          66                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PZ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PZ8)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Family: DIX (2)
1aDIX-3pz8H01H:4-85
1bDIX-3pz8H02H:4-85
1cDIX-3pz8H03H:4-85
1dDIX-3pz8H04H:4-85
1eDIX-3pz8H05H:4-85
1fDIX-3pz8H06H:4-85
1gDIX-3pz8H07H:4-85
1hDIX-3pz8H08H:4-85

(-) Gene Ontology  (63, 63)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (DVL1_MOUSE | P51141)
molecular function
    GO:0048365    Rac GTPase binding    Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases.
    GO:0008013    beta-catenin binding    Interacting selectively and non-covalently with the beta subunit of the catenin complex.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0005109    frizzled binding    Interacting selectively and non-covalently with the frizzled (fz) receptor.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0060071    Wnt signaling pathway, planar cell polarity pathway    The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity.
    GO:0048675    axon extension    Long distance growth of a single axon process involved in cellular development.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007409    axonogenesis    De novo generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells. Refers to the morphogenesis or creation of shape or form of the developing axon.
    GO:0060070    canonical Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.
    GO:0090103    cochlea morphogenesis    The process in which the cochlea is generated and organized.
    GO:0048668    collateral sprouting    The process in which outgrowths develop from the shafts of existing axons.
    GO:0022007    convergent extension involved in neural plate elongation    The process of directed cell movement in the neural plate resulting in tissue elongation via intercalation of adjacent cells in an epithelial sheet at the midline, leading to narrowing and lengthening of the neural plate.
    GO:0060029    convergent extension involved in organogenesis    The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contribution to the shaping of an organ.
    GO:0031122    cytoplasmic microtubule organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
    GO:0048813    dendrite morphogenesis    The process in which the anatomical structures of a dendrite are generated and organized. A dendrite is a freely branching protoplasmic process of a nerve cell.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0032091    negative regulation of protein binding    Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0021915    neural tube development    The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.
    GO:0007528    neuromuscular junction development    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction.
    GO:0007269    neurotransmitter secretion    The regulated release of neurotransmitter from the presynapse into the synaptic cleft via calcium regualated exocytosis during synaptic transmission.
    GO:0090179    planar cell polarity pathway involved in neural tube closure    The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors that modulates the establishment of planar polarity contributing to neural tube closure.
    GO:0030177    positive regulation of Wnt signaling pathway    Any process that activates or increases the frequency, rate or extent of Wnt signal transduction.
    GO:0090263    positive regulation of canonical Wnt signaling pathway    Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0032436    positive regulation of proteasomal ubiquitin-dependent protein catabolic process    Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0060134    prepulse inhibition    The process in which a startle magnitude is reduced when the startling stimulus is preceded by a low-intensity prepulse.
    GO:0035372    protein localization to microtubule    A process in which a protein is transported to, or maintained at, a microtubule.
    GO:0034504    protein localization to nucleus    A process in which a protein transports or maintains the localization of another protein to the nucleus.
    GO:0050821    protein stabilization    Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
    GO:0043113    receptor clustering    The receptor metabolic process that results in grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response.
    GO:1903827    regulation of cellular protein localization    Any process that modulates the frequency, rate or extent of cellular protein localization. Cellular protein localization is any process in which a protein is transported to, and/or maintained in, a specific location and encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
    GO:0001505    regulation of neurotransmitter levels    Any process that modulates levels of neurotransmitter.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
    GO:0071340    skeletal muscle acetylcholine-gated channel clustering    The accumulation of acetylcholine-gated cation channels in a narrow, central region of muscle fibers, in apposition to nerve terminals.
    GO:0035176    social behavior    Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.
    GO:0050808    synapse organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
cellular component
    GO:1990909    Wnt signalosome    A multiprotein protein complex containing membrane-localized Wnt receptors and cytosolic protein complexes, which is capable of transmitting the Wnt signal. Contains at least a Wnt protein, LRP5 or LRP6, a member of the Frizzled (Fz) family, Axin and and a Dishevelled (DVL) protein.
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0030136    clathrin-coated vesicle    A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0030426    growth cone    The migrating motile tip of a growing nerve cell axon or dendrite.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0015630    microtubule cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0098793    presynapse    The part of a synapse that is part of the presynaptic cell.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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        DVL1_MOUSE | P511411fsh 1mc7 2kaw 2mx6

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