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(-) Description

Title :  STRUCTURE OF PUTATIVE FLAGELLAR HOOK-ASSOCIATED PROTEIN FROM VIBRIO PARAHAEMOLYTICUS
 
Authors :  U. A. Ramagopal, Y. Patskovsky, R. Toro, S. K. Burley, S. C. Almo, New Yo Research Center For Structural Genomics (Nysgxrc)
Date :  09 Dec 10  (Deposition) - 19 Jan 11  (Release) - 19 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Structural Protein, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, Y. Patskovsky, R. Toro, S. K. Burley, S. C. Almo
Structure Of Putative Flagellar Hook-Associated Protein Fro Vibrio Parahaemolyticus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE FLAGELLAR HOOK-ASSOCIATED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 39-268
    Gene: VPA0274
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 670

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:16 , HOH A:17 , HOH A:23 , HIS A:133BINDING SITE FOR RESIDUE MG A 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PWX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PWX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PWX)

(-) Exons   (0, 0)

(no "Exon" information available for 3PWX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with Q87JH9_VIBPA | Q87JH9 from UniProtKB/TrEMBL  Length:299

    Alignment length:224
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
         Q87JH9_VIBPA    38 KLSDDPMASIKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVNESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNAQDEEGHFLFSGTKTDTAALNKSSGAYVVEGNSDVRVVTVAKGVTMDSNMTAQEILDIGGGKNVLNQIDALIAEFEKPSPNFQAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDLMDGAHSENKLFVDKVSGDL 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...................ee......ee.......eeeee..eeee...hhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pwx A  38 SLSDDPmASIKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSmRDIVLWGANGSLTDQDRSGmITELKSYRDSIESSFNAQDEEGHFLFSGTKTDTAALNKSSGAYVVEGNSDVRVVTVAKGVTmDSNmTAQEILDIGGGKNVLNQIDALIAEFEKPSPNFQAEVDASLNAIDDTmANVLGAmTEIGGRHNNLDLmDGAHSENKLFVDKVSGDL 261
                                  | 47        57        67        77        87  |     97       107  |    117       127       137       147       157       167    |  177       187       197       207       217     | 227  |    237     | 247       257    
                                 44-MSE                                        90-MSE             110-MSE                                                       172-MSE                                            223-MSE  |          243-MSE              
                                                                                                                                                                    176-MSE                                               230-MSE                           


Chain B from PDB  Type:PROTEIN  Length:194
 aligned with Q87JH9_VIBPA | Q87JH9 from UniProtKB/TrEMBL  Length:299

    Alignment length:220
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
         Q87JH9_VIBPA    42 DPMASIKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVNESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNAQDEEGHFLFSGTKTDTAALNKSSGAYVVEGNSDVRVVTVAKGVTMDSNMTAQEILDIGGGKNVLNQIDALIAEFEKPSPNFQAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDLMDGAHSENKLFVDKVSGDL 261
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Flagellin_N-3pwxB01 B:42-141                                                                                   ---------------------------------   ------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) Flagellin_N-3pwxB02 B:42-141                                                                                   ---------------------------------   ------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------------hhhhhhhhhhhhhhhhh...............-----------..........eeeee..eeee...hhhhhhh..---hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pwx B  42 DPmASIKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSmRDIVLWG------------mITELKSYRDSIESSFNAQDEEGHFLFSGTKT-----------YVVEGNSDVRVVTVAKGVTmDSNmTAQEILDIG---NVLNQIDALIAEFEKPSPNFQAEVDASLNAIDDTmANVLGAmTEIGGRHNNLDLmDGAHSENKLFVDKVSGDL 261
                              |     51        61        71        81        91     |   -       111       121       131       141         - |     161       171|   |  181   |   191       201       211       221 |     231       241 |     251       261
                             44-MSE                                        90-MSE 97          110-MSE                        141         153                172-MSE      185 189                               223-MSE  |          243-MSE              
                                                                                                                                                                176-MSE                                               230-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PWX)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Flagellin_N] (5)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q87JH9_VIBPA | Q87JH9)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0071973    bacterial-type flagellum-dependent cell motility    Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
cellular component
    GO:0009288    bacterial-type flagellum    A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
    GO:0009424    bacterial-type flagellum hook    The portion of the flagellum that connects the filament to the basal body. Examples of this component are found in bacteria.

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