| molecular function |
|---|
| | GO:0003677 | | DNA binding | | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| | GO:0042393 | | histone binding | | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
| | GO:0003676 | | nucleic acid binding | | Interacting selectively and non-covalently with any nucleic acid. |
| | GO:0031491 | | nucleosome binding | | Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| | GO:0005515 | | protein binding | | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
| | GO:0001073 | | transcription antitermination factor activity, DNA binding | | Binds to DNA, typically within region of the promoter and transcribed region, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind DNA include the lambda Q protein. |
| | GO:0000991 | | transcription factor activity, core RNA polymerase II binding | | Interacting selectively and non-covalently with an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. |
| biological process |
|---|
| | GO:0070827 | | chromatin maintenance | | The chromatin organization process that preserves chromatin in a stable functional or structural state. |
| | GO:0006325 | | chromatin organization | | Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin. |
| | GO:0006338 | | chromatin remodeling | | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. |
| | GO:0000122 | | negative regulation of transcription from RNA polymerase II promoter | | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| | GO:0000433 | | negative regulation of transcription from RNA polymerase II promoter by glucose | | Any process involving glucose that stops, prevents or reduces the rate of transcription from an RNA polymerase II promoter. |
| | GO:0006139 | | nucleobase-containing compound metabolic process | | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. |
| | GO:0006334 | | nucleosome assembly | | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
| | GO:0034728 | | nucleosome organization | | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes. |
| | GO:0016973 | | poly(A)+ mRNA export from nucleus | | The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm. |
| | GO:0032968 | | positive regulation of transcription elongation from RNA polymerase II promoter | | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
| | GO:0045944 | | positive regulation of transcription from RNA polymerase II promoter | | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| | GO:0071931 | | positive regulation of transcription involved in G1/S transition of mitotic cell cycle | | Any process that activates or increases transcription as part of the G1/S transition of the mitotic cell cycle. |
| | GO:0032784 | | regulation of DNA-templated transcription, elongation | | Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. |
| | GO:0000414 | | regulation of histone H3-K36 methylation | | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3. |
| | GO:0031440 | | regulation of mRNA 3'-end processing | | Any process that modulates the frequency, rate or extent of mRNA 3'-end processing, any process involved in forming the mature 3' end of an mRNA molecule. |
| | GO:0060303 | | regulation of nucleosome density | | Any process that modulates the number of nucleosomes in a given region of a chromosome. |
| | GO:0006357 | | regulation of transcription from RNA polymerase II promoter | | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| | GO:0043618 | | regulation of transcription from RNA polymerase II promoter in response to stress | | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). |
| | GO:0006355 | | regulation of transcription, DNA-templated | | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| | GO:0001178 | | regulation of transcriptional start site selection at RNA polymerase II promoter | | Any process that modulates the rate, frequency or extent of a process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript. |
| | GO:0031564 | | transcription antitermination | | Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond termination site(s). |
| | GO:0006351 | | transcription, DNA-templated | | The cellular synthesis of RNA on a template of DNA. |
| cellular component |
|---|
| | GO:0005634 | | nucleus | | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| | GO:0035327 | | transcriptionally active chromatin | | The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed. |
Description
