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(-) Description

Title :  REP1-NXSQ FATTY ACID TRANSPORTER Y128F MUTANT
 
Authors :  G. Berberian, M. Bollo, E. Howard, A. Cousido-Siah, A. Mitschler, D. Ay S. Sanglier-Cianferani, A. Van Dorsselaer, R. Dipolo, L. Beauge, T. C. Schulze-Briese, M. Wang, A. Podjarny
Date :  24 Nov 10  (Deposition) - 28 Dec 11  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Fatty Acid Transporter, Y128F Mutant, Beta-Sandwich, Fatty Acid, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Cousido-Siah, D. Ayoub, G. Berberian, M. Bollo, A. Van Dorsselaer F. Debaene, R. Dipolo, T. Petrova, C. Schulze-Briese, V. Olieric, A. Esteves, A. Mitschler, S. Sanglier-Cianferani, L. Beauge, A. Podjarny
Structural And Functional Studies Of Rep1-Ncxsq, A Protein Regulating The Squid Nerve Na+/Ca2+ Exchanger.
Acta Crystallogr. , Sect. D V. 68 1098 2012
PubMed-ID: 22948910  |  Reference-DOI: 10.1107/S090744491202094X

(-) Compounds

Molecule 1 - SODIUM-CALCIUM EXCHANGER
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: LONGFIN INSHORE SQUID
    Organism Scientific: LOLIGO PEALEI
    Organism Taxid: 6621

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1PAM3Ligand/IonPALMITOLEIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PAM1Ligand/IonPALMITOLEIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PAM1Ligand/IonPALMITOLEIC ACID
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1PAM1Ligand/IonPALMITOLEIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:39 , GLN A:41 , THR A:61 , GLY A:76 , ASP A:77 , MET A:115 , ARG A:126 , HOH A:176 , HOH A:238BINDING SITE FOR RESIDUE PAM A 133
2AC2SOFTWAREPHE B:17 , MET B:21 , ALA B:34 , PRO B:39 , GLN B:41 , THR B:54 , PHE B:58 , MET B:115 , ARG B:126 , PHE B:128 , HOH B:197BINDING SITE FOR RESIDUE PAM B 133
3AC3SOFTWAREPHE C:17 , MET C:30 , ALA C:34 , PRO C:39 , GLN C:41 , GLY C:76 , ASP C:77 , ARG C:79 , ARG C:126 , PHE C:128 , HOH C:144BINDING SITE FOR RESIDUE PAM C 133

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PP6)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ser A:99 -Pro A:100
2Ser B:99 -Pro B:100
3Ser C:99 -Pro C:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PP6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PP6)

(-) Exons   (0, 0)

(no "Exon" information available for 3PP6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with C4N147_DORPE | C4N147 from UniProtKB/TrEMBL  Length:132

    Alignment length:130
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
         C4N147_DORPE     2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIYKRV 131
               SCOP domains d3pp6a_ A: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeeehhhhhhhhh..hhhhhhhhhhh..eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeee....eeeeeeee..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pp6 A   2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIFKRV 131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with C4N147_DORPE | C4N147 from UniProtKB/TrEMBL  Length:132

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         C4N147_DORPE     2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIYKRVD 132
               SCOP domains d3pp6b_ B: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeeehhhhhhhhh..hhhhhhhhhhh..eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeee....eeeeeeee..eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pp6 B   2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIFKRVD 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 


Chain C from PDB  Type:PROTEIN  Length:131
 aligned with C4N147_DORPE | C4N147 from UniProtKB/TrEMBL  Length:132

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         C4N147_DORPE     2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIYKRVD 132
               SCOP domains d3pp6c_ C: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhheeeeeeeeehhhhhhhhh...hhhhhhhhhh..eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeee....eeeeeeee..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pp6 C   2 AADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIFKRVD 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PP6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3PP6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (C4N147_DORPE | C4N147)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  3pp6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C4N147_DORPE | C4N147: 3ppt

(-) Related Entries Specified in the PDB File

1yiv STRUCTURE OF MYELIN P2 PROTEIN FROM EQUINE SPINAL CORD
3ppt REP1-NXSQ FATTY ACID TRANSPORTER