3PL9 - JenaLib

Title :   CRYSTAL STRUCTURE OF SPINACH MINOR LIGHT-HARVESTING COMPLEX CP29 AT 2.80 ANGSTROM RESOLUTION

Authors :   X. W. Pan, M. Li, T. Wan, L. F. Wang, C. J. Jia, Z. Q. Hou, X. L. Zhao, J. P. Zha W. R. Chang

Date :   14 Nov 10 (Deposition) - 09 Feb 11 (Release) - 09 Feb 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A

Keywords :   Cp29, Chlorophyll A-B Binding Protein, Light-Harvesting Complex, Membrane Protein, Plant, Photosynthesis, Chloroplast, Thylakoid, Photosystem Ii (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. W. Pan, M. Li, T. Wan, L. F. Wang, C. J. Jia, Z. Q. Hou, X. L. Zhao, J. P. Zhang, W. R. Chang
Structural Insights Into Energy Regulation Of Light-Harvesting Complex Cp29 From Spinach
Nat. Struct. Mol. Biol. 2011
PubMed: search | Reference-DOI: 10.1038/NSMB.2008

Compounds

Molecule 1 - CHLOROPHYLL A-B BINDING PROTEIN
	Chains	:	A
	Organism Common	:	SPINACH
	Organism Scientific	:	SPINACIA OLERACEA
	Organism Taxid	:	3562

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 19)

Asymmetric/Biological Unit (7, 19)

No.	Name	Count	Type	Full Name
1	CHL	4	Ligand/Ion	CHLOROPHYLL B
2	CLA	9	Ligand/Ion	CHLOROPHYLL A
3	G3P	1	Ligand/Ion	SN-GLYCEROL-3-PHOSPHATE
4	HTG	2	Ligand/Ion	HEPTYL 1-THIOHEXOPYRANOSIDE
5	LUT	1	Ligand/Ion	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
6	NEX	1	Ligand/Ion	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
7	XAT	1	Ligand/Ion	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL

Sites (19, 19)

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:92 , CYS A:95 , GLU A:96 , ARG A:202 , MET A:205 , VAL A:206 , LEU A:209 , XAT A:622	BINDING SITE FOR RESIDUE CLA A 602
02	AC2	SOFTWARE	ARG A:91 , PHE A:92 , CYS A:95 , HIS A:99 , CLA A:609 , XAT A:622	BINDING SITE FOR RESIDUE CLA A 603
03	AC3	SOFTWARE	LEU A:105 , GLY A:109 , THR A:112 , VAL A:113 , THR A:117 , ALA A:124 , GLU A:128 , SER A:134 , TYR A:135 , LEU A:136 , HOH A:244 , HOH A:263 , HOH A:307 , CHL A:606 , XAT A:622 , NEX A:623	BINDING SITE FOR RESIDUE CLA A 604
04	AC4	SOFTWARE	GLY A:125 , GLU A:128 , SER A:133 , PHE A:142 , MET A:144 , LEU A:147 , ILE A:150 , GLU A:151 , ILE A:155 , TYR A:157 , GLN A:161 , HOH A:245 , HOH A:248 , HOH A:303 , HOH A:305 , CLA A:604 , CHL A:607 , XAT A:622 , NEX A:623	BINDING SITE FOR RESIDUE CHL A 606
05	AC5	SOFTWARE	GLN A:122 , ASP A:123 , GLY A:125 , LYS A:126 , LEU A:129 , MET A:144 , GLU A:151 , VAL A:152 , HOH A:245 , CHL A:606	BINDING SITE FOR RESIDUE CHL A 607
06	AC6	SOFTWARE	ILE A:98 , ARG A:101 , TRP A:102 , ILE A:158 , GLN A:161 , ARG A:162 , GLU A:165 , THR A:177 , PHE A:178 , HOH A:246 , HOH A:247 , CLA A:610	BINDING SITE FOR RESIDUE CHL A 608
07	AC7	SOFTWARE	GLU A:94 , CYS A:95 , ILE A:98 , HIS A:99 , TRP A:102 , ILE A:155 , GLY A:156 , GLU A:159 , ARG A:162 , ASN A:163 , CLA A:603	BINDING SITE FOR RESIDUE CLA A 609
08	AC8	SOFTWARE	ARG A:101 , MET A:104 , TYR A:173 , PRO A:174 , GLY A:175 , PHE A:178 , ASP A:179 , LEU A:183 , ALA A:184 , LEU A:193 , GLU A:197 , CHL A:608 , LUT A:620	BINDING SITE FOR RESIDUE CLA A 610
09	AC9	SOFTWARE	ILE A:192 , ALA A:196 , LYS A:199 , HIS A:200 , CLA A:612 , CHL A:614 , CLA A:615 , LUT A:620 , G3P A:630	BINDING SITE FOR RESIDUE CLA A 611
10	BC1	SOFTWARE	LEU A:108 , LEU A:181 , GLY A:182 , LEU A:183 , SER A:185 , LYS A:189 , HIS A:200 , LEU A:203 , CLA A:611	BINDING SITE FOR RESIDUE CLA A 612
11	BC2	SOFTWARE	VAL A:206 , GLY A:210 , GLN A:214 , ASN A:225 , HIS A:229 , THR A:236 , THR A:237 , ILE A:238 , CHL A:614 , LUT A:620	BINDING SITE FOR RESIDUE CLA A 613
12	BC3	SOFTWARE	TRP A:226 , HIS A:229 , LEU A:230 , SER A:231 , PRO A:233 , THR A:237 , ILE A:238 , CLA A:611 , CLA A:613 , CLA A:615	BINDING SITE FOR RESIDUE CHL A 614
13	BC4	SOFTWARE	LEU A:195 , LYS A:199 , ARG A:202 , VAL A:206 , TRP A:226 , CLA A:611 , CHL A:614 , XAT A:622 , G3P A:630	BINDING SITE FOR RESIDUE CLA A 615
14	BC5	SOFTWARE	MET A:104 , LEU A:108 , PHE A:178 , ASP A:179 , PRO A:180 , LEU A:181 , GLY A:182 , LEU A:183 , HIS A:200 , GLY A:207 , PHE A:211 , GLN A:214 , PRO A:222 , TRP A:226 , CLA A:610 , CLA A:611 , CLA A:613	BINDING SITE FOR RESIDUE LUT A 620
15	BC6	SOFTWARE	HIS A:99 , ALA A:106 , TRP A:121 , ALA A:124 , HOH A:244 , HOH A:265 , CLA A:602 , CLA A:603 , CLA A:604 , CHL A:606 , CLA A:615	BINDING SITE FOR RESIDUE XAT A 622
16	BC7	SOFTWARE	TRP A:102 , TYR A:135 , VAL A:154 , TYR A:157 , ILE A:158 , CLA A:604 , CHL A:606	BINDING SITE FOR RESIDUE NEX A 623
17	BC8	SOFTWARE	LYS A:199 , TRP A:226 , CLA A:611 , CLA A:615	BINDING SITE FOR RESIDUE G3P A 630
18	BC9	SOFTWARE	VAL A:152 , PHE A:160 , GLN A:161 , ALA A:164 , HTG A:632	BINDING SITE FOR RESIDUE HTG A 631
19	CC1	SOFTWARE	GLU A:165 , LEU A:166 , ASP A:167 , LYS A:170 , HTG A:631	BINDING SITE FOR RESIDUE HTG A 632

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:156
 aligned with F2Z293_SPIOL | F2Z293 from UniProtKB/TrEMBL  Length:243

    Alignment length:156
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237      
         F2Z293_SPIOL    88 GLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTILDRFL 243
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.eee..eee..hhhhhhhhhhhhhhhhhhhhhh..........hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pl9 A  88 GLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTILDRFL 243
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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