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(-) Description

Title :  CRYSTAL STRUCTURE OF GBS52, THE MINOR PILIN IN GRAM-POSITIVE PATHOGEN STREPTOCOCCUS AGALACTIAE
 
Authors :  S. V. L. Narayana, V. Krishnan
Date :  04 Nov 10  (Deposition) - 17 Nov 10  (Release) - 17 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Ig-Like Fold, Igg-Rev Fold, Gbs52, Streptococcus Agalactiae, Gram- Positive Pilins, Adhesions, Cell Adhesion, Cell Wall Anchoring, Adhesion, Pilus Subunit, Isopeptide Bond, Gram-Positive Bacterial Cell Wall, Structural Protein, Cell Ahdesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Krishnan, A. H. Gaspar, N. Ye, A. Mandlik, H. Ton-That, S. V. Narayan
An Igg-Like Domain In The Minor Pilin Gbs52 Of Streptococcu Agalactiae Mediates Lung Epithelial Cell Adhesion.
Structure V. 15 893 2007
PubMed-ID: 17697995  |  Reference-DOI: 10.1016/J.STR.2007.06.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL WALL SURFACE ANCHOR FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: XL1BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: GBS052 (UNP RESIDUES 31-267)
    Gene: GBS052, SAG0646
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 208435
    Strain: 2603V/R

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
 aligned with Q8E0S8_STRA5 | Q8E0S8 from UniProtKB/TrEMBL  Length:307

    Alignment length:238
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
         Q8E0S8_STRA5    30 THQLTIVHLEARDIDRPNPQLEIAPKEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEKNRNVSAFLVDLSEDKVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTIENKKVPTPKVPSR 267
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------Cna_B-3phsA01 A:171-253                                                            -------------- Pfam domains
         Sec.struct. author .eeeeee.ee.hhhhh............ee....eeeeeee......hhhhhhhh.hhhhhhhheeeeeeee.....eeeeeee..eeeeeeeee..ee......eeeee...eee.......eeeeeeeeeeee..eeee....eeeeee........ee..ee.........ee.....eeeeeeee.eeeeeeeee....ee....eeeeee....eeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3phs A  30 SHQLTIVHLEARDIDRPNPQLEIAPKEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEKNRNVSAFLVDLSEDKVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTIENKKVPTPKVPSR 267
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Transthyretin (88)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8E0S8_STRA5 | Q8E0S8)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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(-) Related Entries Specified in the PDB File

3pf2 MAJOR PILIN OF STREPTOCOCCUS AGALACTIAE