3PE5 - JenaLib

Title :   THREE-DIMENSIONAL STRUCTURE OF PROTEIN A7VV38_9CLOT FROM CLOSTRIDIUM LEPTUM DSM 753, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET QLR103

Authors :   A. Kuzin, M. Su, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, D. Wa J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt Northeast Structural Genomics Consortium (Nesg)

Date :   25 Oct 10 (Deposition) - 10 Nov 10 (Release) - 22 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.38

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kuzin, M. Su, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Qlr103
To Be Published
PubMed: search

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Taxid	:	469008
	Gene	:	CLOLEP_02443
	Organism Scientific	:	CLOSTRIDIUM LEPTUM
	Organism Taxid	:	428125
	Strain	:	DSM 753

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 24)

Asymmetric Unit (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:278
 aligned with A7VV38_9FIRM | A7VV38 from UniProtKB/TrEMBL  Length:395

    Alignment length:278
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370        
         A7VV38_9FIRM   101 TLIKDPMVLNIMLFGSDERPGETGYGRSDTMMLLSIDNRNKKLKLTSFMRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEMTQTEADVMNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFMLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEMAGLAGGAISSYMDYPMYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEM 378
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee.............eeeeeeee....eeeeeee....eeee...eeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhh.eeee.hhhhhhhhhh............eeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhh.eeeeee.....eeeeee..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pe5 A 101 TLIKDPmVLNImLFGSDERPGETGYGRSDTmmLLSIDNRNKKLKLTSFmRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEmTQTEADVmNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFmLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEmAGLAGGAISSYmDYPmYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEm 378
                                  |110 |     120       130||     140       150       160       170       180       190       200       210  |    220|      230       240       250       260       270       280       290       300   |   310     | 320       330       340       350       360       370       |
                                  |    |                131-MSE           149-MSE                                                         213-MSE 221-MSE                                        268-MSE                             304-MSE     316-MSE                                                       378-MSE
                                107-MSE|                 132-MSE                                                                                                                                                                                     320-MSE                                                      
                                     112-MSE

Chain B from PDB  Type:PROTEIN  Length:278
 aligned with A7VV38_9FIRM | A7VV38 from UniProtKB/TrEMBL  Length:395

    Alignment length:278
                                   110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370        
         A7VV38_9FIRM   101 TLIKDPMVLNIMLFGSDERPGETGYGRSDTMMLLSIDNRNKKLKLTSFMRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEMTQTEADVMNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFMLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEMAGLAGGAISSYMDYPMYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEM 378
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee.............eeeeeeee....eeeeeee....eeee...eeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhh..eeeeehhhhhhhhh............eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhh.eeeeee.....eeeeee..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pe5 B 101 TLIKDPmVLNImLFGSDERPGETGYGRSDTmmLLSIDNRNKKLKLTSFmRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEmTQTEADVmNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFmLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEmAGLAGGAISSYmDYPmYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEm 378
                                  |110 |     120       130||     140       150       160       170       180       190       200       210  |    220|      230       240       250       260       270       280       290       300   |   310     | 320       330       340       350       360       370       |
                                  |    |                131-MSE           149-MSE                                                         213-MSE 221-MSE                                        268-MSE                             304-MSE     316-MSE                                                       378-MSE
                                107-MSE|                 132-MSE                                                                                                                                                                                     320-MSE                                                      
                                     112-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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	Cis Peptide Bonds
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		Leu A:325 - Pro A:326	[ RasMol ]
		Leu B:325 - Pro B:326	[ RasMol ]

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