3P63 - JenaLib

Title :   STRUCTURE OF M. LAMINOSUS FERREDOXIN WITH A SHORTER L1,2 LOOP

Authors :   O. Livnah, R. Nechushtai, Y. Eisenberg-Domovich, D. Michaeli

Date :   11 Oct 10 (Deposition) - 09 Feb 11 (Release) - 09 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Ferredoxin, Thermostability, Beta-Grasp Fold, Redox, Fe2S2, Concerting The L1, 2 Loop Into A Beta-Turn, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Nechushtai, H. Lammert, D. Michaeli, Y. Eisenberg-Domovich, J. A. Zuris, M. A. Luca, D. T. Capraro, A. Fish, O. Shimshon, M. Roy, A. Schug, P. C. Whitford, O. Livnah, J. N. Onuchic, P. A. Jennings
Allostery In The Ferredoxin Protein Motif Does Not Involve Conformational Switch.
Proc. Natl. Acad. Sci. Usa V. 108 2240 2011
PubMed-ID: 21266547 | Reference-DOI: 10.1073/PNAS.1019502108

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER_MASLA	4-96	2	A:3-95 B:3-95
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER_MASLA	42-50	2	A:41-49 B:41-49

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER_MASLA	4-96	1	A:3-95 -
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER_MASLA	42-50	1	A:41-49 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER_MASLA	4-96	1	- B:3-95
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER_MASLA	42-50	1	- B:41-49

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:95
 aligned with FER_MASLA | P00248 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
             FER_MASLA    2 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98
               SCOP domains d3p63a_ A: a  utomated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....--eeeeeee...hhhhhhhhh................eeeeee..ee.......hhhhhhh.eee....ee...eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: A:3-95 UniProt: 4-96                                                       -- PROSITE (1)
                PROSITE (2) ----------------------------------------2FE2S_FER------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3p63 A  1 ATYKVTLINPTG--NKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97
                                    10 |  |   20        30        40        50        60        70        80        90       
                                      12 15

Chain B from PDB  Type:PROTEIN  Length:95
 aligned with FER_MASLA | P00248 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
             FER_MASLA    2 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98
               SCOP domains d3p63b_ B: a  utomated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------Fer2-3p63B01 B:15-84                                                  ------------- Pfam domains (1)
           Pfam domains (2) --------------Fer2-3p63B02 B:15-84                                                  ------------- Pfam domains (2)
         Sec.struct. author .eeeeeee....--eeeeeee...hhhhhhhhh................eeeeee..ee.......hhhhhhhheee.hhhee...eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: B:3-95 UniProt: 4-96                                                       -- PROSITE (1)
                PROSITE (2) ----------------------------------------2FE2S_FER------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3p63 B  1 ATYKVTLINPTG--NKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97
                                    10 |  |   20        30        40        50        60        70        80        90       
                                      12 15

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (6, 6)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FER_MASLA | P00248)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0022900	electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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