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(-) Description

Title :  ACTINIDIN FROM ACTINIDIA ARGUTA PLANCH (SARUSASHI)
 
Authors :  Y. Manickam, N. Nirmal, A. Suzuki, Y. Sugiyama, T. Yamane, V. Devadasan
Date :  11 Oct 10  (Deposition) - 03 Nov 10  (Release) - 22 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Sad, Cysteine Proteinases, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yogavel, N. Nithya, A. Suzuki, Y. Sugiyama, T. Yamane, D. Velmurugan, A. Sharma
Structural Analysis Of Actinidin And A Comparison Of Cadmiu And Sulfur Anomalous Signals From Actinidin Crystals Measured Using In-House Copper- And Chromium-Anode X-Ray Sources
Acta Crystallogr. , Sect. D V. 66 1323 2010
PubMed-ID: 21123873  |  Reference-DOI: 10.1107/S0907444910040394

(-) Compounds

Molecule 1 - ACTINIDIN
    Chains: A
    EC Number: 3.4.22.14
    Organism Common: SARUSASHI
    Organism Scientific: ACTINIDIA ARGUTA
    Organism Taxid: 64478

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CD5Ligand/IonCADMIUM ION
2CSD1Mod. Amino Acid3-SULFINOALANINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECSD A:25 , HIS A:162 , ASN A:220 , HOH A:267 , HOH A:268BINDING SITE FOR RESIDUE CD A 221
2AC2SOFTWAREGLU A:114 , ASP A:176 , HOH A:258 , HOH A:269 , HOH A:401BINDING SITE FOR RESIDUE CD A 222
3AC3SOFTWAREGLU A:191 , HOH A:365 , HOH A:420 , HOH A:421BINDING SITE FOR RESIDUE CD A 223
4AC4SOFTWAREASP A:44 , ASP A:101 , HOH A:266 , HOH A:270BINDING SITE FOR RESIDUE CD A 224
5AC5SOFTWAREASP A:15 , HOH A:244BINDING SITE FOR RESIDUE CD A 225

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:65
2A:56 -A:98
3A:156 -A:206

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:154 -Pro A:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3P5U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3P5U)

(-) Exons   (0, 0)

(no "Exon" information available for 3P5U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
 aligned with A5HII2_ACTAR | A5HII2 from UniProtKB/TrEMBL  Length:380

    Alignment length:220
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346
         A5HII2_ACTAR   127 LPDYVDWRSAGAVVDIKSQGQCGSCWAFSAIATVEGINKIVTGDLISLSEQELVDCGRTQNTRGCDGGSITDGFQFIINNGGINTEANYPYTAEDGQCNLDLQNEKYASIDTYENVPYNNEWALQTAVAYQPVSVALEAAGDAFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYIRILRNVGGAGTCGIATKPSYPVKYNN 346
               SCOP domains d3p5ua_ A: automated matches                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.................hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.....hhhhh.hhhhhhhhhhhhh.................hhhhhh.......eeee....hhhhhhhhhh...eeeee...hhhhhh....ee.........eeeeeeeeeee..eeeeeee...........eeeee......hhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p5u A   1 LPDYVDWRSSGAVVDIKDQGQCGScWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVKYYN 220
                                    10        20    |   30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
                                                   25-CSD
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P5U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P5U)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A5HII2_ACTAR | A5HII2)
molecular function
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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  Cis Peptide Bonds
    Gly A:154 - Pro A:155   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5HII2_ACTAR | A5HII2: 3p5v 3p5w 3p5x

(-) Related Entries Specified in the PDB File

1aec 2act 3p5v 3p5w 3p5x