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(-) Description

Title :  INTEGRIN BINDING COLLAGEN PEPTIDE
 
Authors :  P. A. Mcewan, J. Emsley
Date :  06 Oct 10  (Deposition) - 12 Jan 11  (Release) - 16 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen, Integrin Recognition, Integrin Alpha 1 Beta 1, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Byrne, P. A. Mcewan, J. Emsley, P. M. Fischer, W. C. Chan
End-Stapled Homo And Hetero Collagen Triple Helices: A Clic Chemistry Approach.
Chem. Commun. (Camb. ) V. 47 2589 2011
PubMed-ID: 21173963  |  Reference-DOI: 10.1039/C0CC04795C

(-) Compounds

Molecule 1 - SYNTHETIC COLLAGEN PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric/Biological Unit (3, 19)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2HYP15Mod. Amino Acid4-HYDROXYPROLINE
3NH22Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 3P46)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3P46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3P46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3P46)

(-) Exons   (0, 0)

(no "Exon" information available for 3P46)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  3p46 A  1 xGPpGPpGLpGEAGPpGPpx 20
                            |  |  | 10     |  20
                            |  |  |  |     |  ||
                            1-ACE |  |     |  ||
                               4-HYP |     |  ||
                                  7-HYP    |  ||
                                    10-HYP |  ||
                                          16-HYP
                                             19-HYP
                                              20-NH2


Chain B from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  3p46 B  1 xGPpGPpGLpGEAGPpGPp 19
                            |  |  | 10     |  |
                            |  |  |  |     |  |
                            1-ACE |  |     |  |
                               4-HYP |     |  |
                                  7-HYP    |  |
                                    10-HYP |  |
                                          16-HYP
                                             19-HYP


Chain C from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  3p46 C  2 GPpGPpGLpGEAGPpGPpx 20
                              |  |  11    |  ||
                              |  |  |     |  ||
                              4-HYP |     |  ||
                                 7-HYP    |  ||
                                   10-HYP |  ||
                                         16-HYP
                                            19-HYP
                                             20-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3P46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P46)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3P46)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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