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(-) Description

Title :  THE CRYSTAL STRUCTURE OF TRANSLATIONALLY CONTROLLED TUMOR PROTEIN (TCTP) OF PLASMODIUM FALCIPARUM
 
Authors :  T. Eichhorn, D. Winter, N. Dirdjaja, M. Frank, L. Krauth-Siegel, J. Gra T. Efferth
Date :  05 Oct 10  (Deposition) - 09 Nov 11  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Mainly Beta, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Eichhorn, D. Winter, B. Buchele, N. Dirdjaja, M. Frank, W. D. Lehmann, R. Mertens, R. L. Krauth-Siegel, T. Simmet, J. Granzin, T. Efferth
Molecular Interaction Of Artemisinin With Translationally Controlled Tumor Protein (Tctp) Of Plasmodium Falciparum.
Biochem Pharmacol V. 85 38 2013
PubMed-ID: 23085438  |  Reference-DOI: 10.1016/J.BCP.2012.10.006

(-) Compounds

Molecule 1 - TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TCTP, PFE0545C
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7
    Synonym: TCTP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3P3K)

(-) Sites  (0, 0)

(no "Site" information available for 3P3K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P3K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3P3K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3P3K)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TCTP_3PS51797 Translationally controlled tumor protein (TCTP) domain profile.TCTP_PLAF71-171  1A:5-175
2TCTP_2PS01003 Translationally controlled tumor protein (TCTP) domain signature 2.TCTP_PLAF7128-150  1A:132-154

(-) Exons   (0, 0)

(no "Exon" information available for 3P3K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with TCTP_PLAF7 | Q8I3Z5 from UniProtKB/Swiss-Prot  Length:171

    Alignment length:182
                                1                                                                                                                                                                       171       
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166    |    -  
           TCTP_PLAF7     - ----MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEGMGADVEHVIDIVDSFQLTSTAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEKY-------   -
               SCOP domains d3p3ka_ A: automated matches                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....eeee......hhhhhhhhhh.eeeee..ee..-----------------------.eehhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhheeee..........eeee........eeeee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----TCTP_3  PDB: A:5-175 UniProt: 1-171                                                                                                                                        ------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------TCTP_2  PDB: A:132-154 ---------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p3k A   1 MEFRMKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIK-----------------------HVIDIVDSFQLTSTAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEKYLEHHHHH 182
                                    10        20        30        40      |  -         -         -|       80        90       100       110       120       130       140       150       160       170       180  
                                                                         47                      71
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P3K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P3K)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (TCTP_PLAF7 | Q8I3Z5)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0020020    food vacuole    Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa.

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1txj