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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NUP53 RRM DOMAIN FROM PICHIA GUILLIERMONDII
 
Authors :  P. Sampathkumar, C. Shawn, K. Bain, J. Gilmore, T. Gheyi, S. Atwell, D. A. Thompson, J. S. Emtage, S. Wasserman, J. M. Sauder, S. K. Burley, N Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  04 Oct 10  (Deposition) - 19 Jan 11  (Release) - 19 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Protein Transport, Component Of Nuclear Pore Complex, New York Sgx Research Center For Structural Genomics, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Sampathkumar
Crystal Structure Of The Nup53 Rrm Domain From Pichia Guilliermondii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NUCLEOPORIN 53
    Atcc: 6260
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC);
MODIFIED PET26B
    Expression System Strain: BL21(DE3)-CODON+RIL
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: RRM DOMAIN RESIDUES 261-383
    Gene: NUP53 (GI146415668), PGUG_04532
    Organism Common: YEAST
    Organism Scientific: PICHIA GUILLIERMONDII
    Organism Taxid: 4929

 Structural Features

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  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:87
 aligned with A5DMN1_PICGU | A5DMN1 from UniProtKB/TrEMBL  Length:448

    Alignment length:98
                                   275       285       295       305       315       325       335       345       355        
         A5DMN1_PICGU   266 SAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDKQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVERLQ 363
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Nup35_RRM-3p3dA01 A:266-363                                                                        Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh.....hhhhh..-----------.....ee..eeeee..hhhhhhhhhh....ee..ee.eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3p3d A 266 LAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKP-----------FVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVERLQ 363
                                   275       285       295     |   -       315       325       335       345       355        
                                                             301         313
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Clan: RRM (206)

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Asymmetric Unit(hide GO term definitions)
Chain A   (A5DMN1_PICGU | A5DMN1)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
cellular component
    GO:0005635    nuclear envelope    The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
    GO:0034399    nuclear periphery    The portion of the nuclear lumen proximal to the inner nuclear membrane.
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.

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