3P19 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   IMPROVED NADPH-DEPENDENT BLUE FLUORESCENT PROTEIN

Authors :   T. H. Kao, Y. Chen, C. H. Pai, A. H. J. Wang

Date :   30 Sep 10 (Deposition) - 20 Jul 11 (Release) - 20 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: C,D  (1x)

Keywords :   Rossmann-Fold, Blue Fluorescent Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. H. Kao, Y. Chen, C. H. Pai, M. C. Chang, A. H. J. Wang
Structure Of A Nadph-Dependent Blue Fluorescent Protein Revealed The Unique Role Of Gly176 On The Fluorescence Enhancement.
J. Struct. Biol. V. 174 485 2011
PubMed-ID: 21397029 | Reference-DOI: 10.1016/J.JSB.2011.02.010

Molecule 1 - PUTATIVE BLUE FLUORESCENT PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	VIBRIO VULNIFICUS
	Organism Taxid	:	672
	Synonym	:	BFPVVD8

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(no "Site" information available for 3P19)

(no "SS Bond" information available for 3P19)

Asymmetric Unit

No.	Residues
1	Gly C:203	-	Gly C:204

(no "SAP(SNP)/Variant" information available for 3P19)

(no "PROSITE Motif" information available for 3P19)

(no "Exon" information available for 3P19)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:239
 aligned with Q9F172_VIBVL | Q9F172 from UniProtKB/TrEMBL  Length:239

    Alignment length:239
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230         
         Q9F172_VIBVL     1 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLEALNLPNTLCAQVDVTDKNTFDAAITRAEKIYGPADVLVNNAGVMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNSGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPGAVETELLSHTTSQQIKDGYDAWKVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP 239
               SCOP domains d3p19a_ A: automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhh.....eeeee....hhhhhhhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p19 A   1 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP 239
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain B from PDB  Type:PROTEIN  Length:218
 aligned with Q9F172_VIBVL | Q9F172 from UniProtKB/TrEMBL  Length:239

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
         Q9F172_VIBVL     2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLEALNLPNTLCAQVDVTDKNTFDAAITRAEKIYGPADVLVNNAGVMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNSGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPGAVETELLSHTTSQQIKDGYDAWKVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQ 237
               SCOP domains d3p19b_ B: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee.....------------------...eehhhhhhhhhhhhhh...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p19 B   2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLS------------------GGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQ 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  |      -         - |     211       221       231      
                                                                                                                                                                                                                184                203

Chain C from PDB  Type:PROTEIN  Length:218
 aligned with Q9F172_VIBVL | Q9F172 from UniProtKB/TrEMBL  Length:239

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
         Q9F172_VIBVL     2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLEALNLPNTLCAQVDVTDKNTFDAAITRAEKIYGPADVLVNNAGVMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNSGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPGAVETELLSHTTSQQIKDGYDAWKVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQ 237
               SCOP domains d3p19c_ C: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.........------------------....hhhhhhhhhhhhhh....eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p19 C   2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLS------------------GGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQ 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  |      -         - |     211       221       231      
                                                                                                                                                                                                                184                203

Chain D from PDB  Type:PROTEIN  Length:238
 aligned with Q9F172_VIBVL | Q9F172 from UniProtKB/TrEMBL  Length:239

    Alignment length:238
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231        
         Q9F172_VIBVL     2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLEALNLPNTLCAQVDVTDKNTFDAAITRAEKIYGPADVLVNNAGVMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNSGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPGAVETELLSHTTSQQIKDGYDAWKVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP 239
               SCOP domains d3p19d_ D: automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhh...eeeee.hhhhhhh.....eeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p19 D   2 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP 239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Vibrio vulnificus [TaxId: 672] (1)

1a	d3p19a_	A:
1b	d3p19b_	B:
1c	d3p19c_	C:
1d	d3p19d_	D:

(no "CATH Domain" information available for 3P19)

(no "Pfam Domain" information available for 3P19)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q9F172_VIBVL | Q9F172)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Sites
(no "Sites" information available for 3p19)

	Cis Peptide Bonds
		Gly C:203 - Gly C:204	[ RasMol ]

Biological Units
	Complete Structure
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		Biological Unit 2	[ Jena3D ]
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	3p19
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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