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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TIR DOMAIN FROM THE FLAX DISEASE RESISTANCE PROTEIN L6
 
Authors :  T. Ve, M. Bernoux, S. Williams, E. Valkov, C. Warren, D. Hatters, J. G. El P. N. Dodds, B. Kobe
Date :  25 Sep 10  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Plant Tir Domain, Signal Transduction, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bernoux, T. Ve, S. Williams, C. Warren, D. Hatters, E. Valkov, X. Zhang, J. G. Ellis, B. Kobe, P. N. Dodds
Structural And Functional Analysis Of A Plant Resistance Protein Tir Domain Reveals Interfaces For Self-Association, Signaling, And Autoregulation.
Cell Host Microbe V. 9 200 2011
PubMed-ID: 21402359  |  Reference-DOI: 10.1016/J.CHOM.2011.02.009

(-) Compounds

Molecule 1 - L6TR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Fragment: TIR DOMAIN (UNP RESIDUES 29-229)
    Organism Common: FLAX
    Organism Scientific: LINUM USITATISSIMUM
    Organism Taxid: 4006

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:63 , HOH A:243 , HOH A:245BINDING SITE FOR RESIDUE CO A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OZI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OZI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OZI)

(-) Exons   (0, 0)

(no "Exon" information available for 3OZI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with Q40254_LINUS | Q40254 from UniProtKB/TrEMBL  Length:705

    Alignment length:170
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228
         Q40254_LINUS    59 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISKE 228
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeehhhhhh.hhhhhhhhhhhhh...eeeee....hhhhh..hhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhh...ee..eee..hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ozi A  34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISKE 203
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203


Chain A from PDB  Type:PROTEIN  Length:170
 aligned with Q9XEH0_LINUS | Q9XEH0 from UniProtKB/TrEMBL  Length:1294

    Alignment length:170
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228
         Q9XEH0_LINUS    59 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISKE 228
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeehhhhhh.hhhhhhhhhhhhh...eeeee....hhhhh..hhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhh...ee..eee..hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ozi A  34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISKE 203
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203


Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q40254_LINUS | Q40254 from UniProtKB/TrEMBL  Length:705

    Alignment length:168
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218        
         Q40254_LINUS    59 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 226
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----TIR-3oziB01 B:38-170                                                                                                                 ------------------------------- Pfam domains (1)
           Pfam domains (2) ----TIR-3oziB02 B:38-170                                                                                                                 ------------------------------- Pfam domains (2)
         Sec.struct. author ....eeeeehhhhhh.hhhhhhhhhhhhh...eeeee....hhhhh..hhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhh...ee..eee..hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ozi B  34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193        


Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q9XEH0_LINUS | Q9XEH0 from UniProtKB/TrEMBL  Length:1294

    Alignment length:168
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218        
         Q9XEH0_LINUS    59 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 226
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----TIR-3oziB01 B:38-170                                                                                                                 ------------------------------- Pfam domains (1)
           Pfam domains (2) ----TIR-3oziB02 B:38-170                                                                                                                 ------------------------------- Pfam domains (2)
         Sec.struct. author ....eeeeehhhhhh.hhhhhhhhhhhhh...eeeee....hhhhh..hhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhh...ee..eee..hhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ozi B  34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OZI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OZI)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: STIR (4)

(-) Gene Ontology  (3, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q40254_LINUS | Q40254)
molecular function
    GO:0043531    ADP binding    Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
biological process
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

Chain A,B   (Q9XEH0_LINUS | Q9XEH0)
molecular function
    GO:0043531    ADP binding    Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

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