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Title :   CRYSTAL STRUCTURE OF N5-CARBOXYAMINOIMIDAZOLE SYNTHETASE FROM STAPHYLOCOCCUS AUREUS

Authors :   P. Brugarolas, E. M. Duguid, W. Zhang, C. B. Poor, C. He

Date :   07 Sep 10 (Deposition) - 20 Jul 11 (Release) - 24 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.23

Chains :   Asym./Biol. Unit : A,B

Keywords :   Atp-Grasp Superfamily, Ligase, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Brugarolas, E. M. Duguid, W. Zhang, C. B. Poor, C. He
Structural And Biochemical Characterization Of N5-Carboxyaminoimidazole Ribonucleotide Synthetase And N5-Carboxyaminoimidazole Ribonucleotide Mutase From Staphylococcus Aureus.
Acta Crystallogr. , Sect. D V. 67 707 2011
PubMed-ID: 21795812 | Reference-DOI: 10.1107/S0907444911023821

Compounds

Molecule 1 - N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE
	Chains	:	A, B
	EC Number	:	6.3.4.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG19
	Expression System Strain	:	BL21(DE3)STAR
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	NWMN_0934, PURK
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
	Organism Taxid	:	426430
	Strain	:	NEWMAN
	Synonym	:	PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 18)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:368
 aligned with A0A0H3KFM7_S | A0A0H3KFM7 from UniProtKB/TrEMBL  Length:374

    Alignment length:373
                              1                                                                                                                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368   
         A0A0H3KFM7_S     - --MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMTVLTNDVNQTEQDMYAKFE 371
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee..hhhhhhhhhhhhhh..eeeee.......hhhhh.eee.....hhhhhhhhhhhh.eeee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhh...eeeee...-----.ee...hhhhhhhhhhhhhhh.eeeee...eeeeeeeeeee.hhh.eee...eeeeee..eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeeeee....eeeeeee...hhhhhhhhhhh..hhhhhhhhhhh.............eeeeeeehhhhhhhhhhhhhhhhh.eee..........eeeeeeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3orr A  -1 NAmNFNKLKFGATIGIIGGGQLGKmmAQSAQKmGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFG-----GQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVmmNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKmGHmTVLTNDVNQTEQDmYAKFE 371
                              |      8        18    ||  28  |     38        48        58        68        78        88        98       108       118       128       138       148   |   158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308   ||  318       328       338       348|  |   358       368   
                              |                    23-MSE  31-MSE                                                                                                                  152   158                                                                                                                                                       312-MSE                              349-MSE          366-MSE 
                              1-MSE                 24-MSE                                                                                                                                                                                                                                                                                          313-MSE                                352-MSE

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with A0A0H3KFM7_S | A0A0H3KFM7 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370  
         A0A0H3KFM7_S     1 MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMTVLTNDVNQTEQDMYAKFEG 372
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee..hhhhhhhhhhhhhh..eeeeee......hhhhh.eeee....hhhhhhhhhhhh.eeee.....hhhhhhhhhhhh.....hhhhhhh.hhhhhhhhhhhh......eeee...hhhhhhhhhh...eeeee...-----.eeee.hhhhhhhhhhhhh...eeeee...eeeeeeeeeee.....eee...eeeeee..eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeeeee....eeeeeee...hhhhhhhhhhh..hhhhhhhhhhh.............eeeeeeehhhhhhhhhhhhhhhhh.eee..........eeeeeeee..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3orr B   1 mNFNKLKFGATIGIIGGGQLGKmmAQSAQKmGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFG-----GQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVmmNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKmGHmTVLTNDVNQTEQDmYAKFEG 372
                            |       10        20  ||    30|       40        50        60        70        80        90       100       110       120       130       140       150 |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 ||    320       330       340       350 |     360     | 370  
                            1-MSE                23-MSE  31-MSE                                                                                                                  152   158                                                                                                                                                       312-MSE                              349-MSE          366-MSE  
                                                  24-MSE                                                                                                                                                                                                                                                                                          313-MSE                                352-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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		Tyr A:143 - Pro A:144	[ RasMol ]
		Tyr B:143 - Pro B:144	[ RasMol ]
		Val A:224 - Pro A:225	[ RasMol ]
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Description