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(-) Description

Title :  CRYSTAL STRUCTURE OF RV1498A PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  F. Liu, J. Xiong, S. Kumar, C. Yang, S. Li, S. Ge, N. Xia, K. Swaminathan
Date :  04 Sep 10  (Deposition) - 20 Jul 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.88
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (3x)
Biol. Unit 2:  E,F,G,H  (3x)
Biol. Unit 3:  I,J,K,L  (3x)
Biol. Unit 4:  M,N,O,P  (3x)
Keywords :  Dodecin, Flavin Binding, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Liu, J. Xiong, S. Kumar, C. Yang, S. Ge, S. Li, N. Xia, K. Swaminathan
Structural And Biophysical Characterization Of Mycobacteriu Tuberculosis Dodecin Rv1498A.
J. Struct. Biol. V. 175 31 2011
PubMed-ID: 21539921  |  Reference-DOI: 10.1016/J.JSB.2011.04.013

(-) Compounds

Molecule 1 - RV1498A PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTO-T7
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MT1547, RV1498.1, RV1498A
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (3x): ABCD            
Biological Unit 2 (3x):     EFGH        
Biological Unit 3 (3x):         IJKL    
Biological Unit 4 (3x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1CL8Ligand/IonCHLORIDE ION
2NA5Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:62BINDING SITE FOR RESIDUE CL A 106
02AC2SOFTWARELYS B:62 , LYS D:62BINDING SITE FOR RESIDUE CL C 102
03AC3SOFTWAREASP A:20 , ASP B:20 , ASP C:20 , HOH C:201 , GLU H:68BINDING SITE FOR RESIDUE NA C 111
04AC4SOFTWARELYS E:62BINDING SITE FOR RESIDUE CL E 107
05AC5SOFTWARELYS F:62 , LYS G:62 , LYS H:62BINDING SITE FOR RESIDUE CL H 104
06AC6SOFTWAREASP E:20 , ASP F:20 , HOH F:206 , ASP H:20BINDING SITE FOR RESIDUE NA H 112
07AC7SOFTWAREASP I:20BINDING SITE FOR RESIDUE NA I 114
08AC8SOFTWARELYS I:62 , LYS J:62 , LYS L:62BINDING SITE FOR RESIDUE CL L 103
09AC9SOFTWAREASP J:20 , HOH J:202 , ASP K:20 , ASP L:20BINDING SITE FOR RESIDUE NA L 113
10BC1SOFTWARELYS O:62BINDING SITE FOR RESIDUE CL O 108
11BC2SOFTWARELYS P:62BINDING SITE FOR RESIDUE CL P 101
12BC3SOFTWAREASP N:20 , ASP O:20 , HOH P:203BINDING SITE FOR RESIDUE NA P 115

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OQT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OQT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OQT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OQT)

(-) Exons   (0, 0)

(no "Exon" information available for 3OQT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqta_ A: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.hhhhhhhhhhhhhhhhhh....eeeeeeeeee.......eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt A  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain B from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtb_ B: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt B  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain C from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtc_ C: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt C  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain D from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtd_ D: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt D  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain E from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqte_ E: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhh.......eeeeeeeeee.......eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt E  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain F from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtf_ F: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhhhh....eeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt F  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain G from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtg_ G: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhh.......eeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt G  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain H from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqth_ H: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt H  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain I from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqti_ I: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....hhhhhhhhhhhhhhh....eeeeeeeee..ee....eee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt I  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain J from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtj_ J: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt J  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain K from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtk_ K: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhh......eeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt K  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain L from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtl_ L: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee..hhhhhhhhhhhhhhh........eeeeeeeee....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt L  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain M from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtm_ M: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhh.......eeeeeeee..........eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt M  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain N from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtn_ N: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee..hhhhhhhhhhhhhh.....eeeeeeeeeeeee....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt N  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain O from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqto_ O: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhhh............eee.......eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt O  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70


Chain P from PDB  Type:PROTEIN  Length:70
 aligned with Q8VK10_MYCTO | Q8VK10 from UniProtKB/TrEMBL  Length:70

    Alignment length:70
                                    10        20        30        40        50        60        70
          Q8VK10_MYCTO    1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
               SCOP domains d3oqtp_ P: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeee....eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3oqt P  1 MSNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLEDS 70
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OQT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OQT)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (Q8VK10_MYCTO | Q8VK10)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
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  3oqt
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8VK10_MYCTO | Q8VK10: 2yiz 2yj0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3OQT)