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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BACOVA_00967) FROM BACTEROIDES OVATUS AT 2.08 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  03 Sep 10  (Deposition) - 14 Sep 11  (Release) - 14 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Extracellular Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein (Bacova_00967) From Bacteroides Ovatus At 2. 08 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACOVA_00967
    Organism Scientific: BACTEROIDES OVATUS
    Organism Taxid: 411476
    Strain: ATCC 8483

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA4Ligand/IonCALCIUM ION
3MSE9Mod. Amino AcidSELENOMETHIONINE
4PGE2Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:167 , ASN A:169 , ASP A:170 , GLY A:207 , GLU A:418 , CA A:458 , HOH A:508BINDING SITE FOR RESIDUE CA A 457
2AC2SOFTWAREGLU A:153 , ASP A:167 , ASP A:170 , CA A:457 , HOH A:477 , HOH A:494 , HOH A:508BINDING SITE FOR RESIDUE CA A 458
3AC3SOFTWAREASP A:449 , THR A:452 , ACT A:461 , HOH A:616BINDING SITE FOR RESIDUE CA A 459
4AC4SOFTWAREASN A:135 , ASP A:138 , GLN A:185 , HOH A:472 , HOH A:677BINDING SITE FOR RESIDUE CA A 460
5AC5SOFTWAREGLN A:310 , TYR A:417 , ASP A:449 , GLU A:450 , THR A:452 , CA A:459BINDING SITE FOR RESIDUE ACT A 461
6AC6SOFTWAREVAL A:213 , THR A:291 , LYS A:359 , GLU A:365 , THR A:374 , HOH A:743BINDING SITE FOR RESIDUE PGE A 462
7AC7SOFTWAREPHE A:112 , GLY A:402 , VAL A:433 , ASP A:434 , LYS A:436 , HOH A:669BINDING SITE FOR RESIDUE PGE A 463

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OQQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:156 -Pro A:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OQQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OQQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3OQQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
 aligned with A7LT28_BACO1 | A7LT28 from UniProtKB/TrEMBL  Length:456

    Alignment length:417
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       
         A7LT28_BACO1    40 ASTLVNVYSDKSGSEASLLVGDVLVKDSRTLTLNVPAACEKVYMKYNTVSGTEATKEFALSPVSRGVDQSTGFNFETNRLASVTLALPEDAVQPTNETDQGYLFYHNTGVVMFEDGWPIQLDSWYDEDFNDVVFEYDLKVTECHSQQMMETVGGKEELLLTLDVRAVGGIYPTVLGVVLDGLKSEYVDRITASLILKGGQGTMTDLAKEELSTKNIVKVENKNWNWSNDTRKEPRFAILTVDKAQAEGTVITLDGLTSLMDNNQDMFQVTQGKVREGLPMLRAEVRLIGKEGLTGAERDAQLAAFRELILDTNRQNFFIKVNGGKEIHMRGYAPTSAYKAEYEALVAGDTTLDANVYYSNTKGSTWGVKLPVGTRHAYERVPFREAYPDFTKWVDSKGVSNQKWYENFVDEKTIRYW 456
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.........eeeeee....eeeeeeeee....eeeeeee.....eeeeeee.ee..------.......eeeeeeeee.................eeeeeeeeee.........hhhhh....eeeeeeeeeeee...........eeeeeeeeeeee.....eeeeeeeee..hhh.eeeeeeeeeee.....eeeeeeeeee...eeeeeeeee..........eeeeeeeeeee..eeeeeee.hhhh....................eeeeeeeeee.....hhhhhhhhhhhhhhhhh...eeeeeee...eeee.........hhhhhhhhhh...................eeee.....ee....hhhhhh.hhhhhhhh......hhhhh.hhh.ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oqq A  40 ASTLVNVYSDKSGSEASLLVGDVLVKDSRTLTLNVPAACEKVYmKYNTVSGTEATKEFALSPVS------TGFNFETNRLASVTLALPEDAVQPTNETDQGYLFYHNTGVVmFEDGWPIQLDSWYDEDFNDVVFEYDLKVTECHSQQmmETVGGKEELLLTLDVRAVGGIYPTVLGVVLDGLKSEYVDRITASLILKGGQGTmTDLAKEELSTKNIVKVENKNWNWSNDTRKEPRFAILTVDKAQAEGTVITLDGLTSLmDNNQDmFQVTQGKVREGLPmLRAEVRLIGKEGLTGAERDAQLAAFRELILDTNRQNFFIKVNGGKEIHmRGYAPTSAYKAEYEALVAGDTTLDANVYYSNTKGSTWGVKLPVGTRHAYERVPFREAYPDFTKWVDSKGVSNQKWYENFVDEKTIRYW 456
                                    49        59        69        79   |    89        99   |     -|      119       129       139       149 |     159       169       179       189       199       209       219       229       239  |    249       259       269       279       289       299     | 309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       
                                                                      83-MSE             103    110                                      151-MSE                             187-MSE                                                242-MSE                                                  299-MSE |           319-MSE                                          368-MSE                                                                                    
                                                                                                                                                                              188-MSE                                                                                                              305-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OQQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OQQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OQQ)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A7LT28_BACO1 | A7LT28)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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