3OP5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   HUMAN VACCINIA-RELATED KINASE 1

Authors :   C. K. Allerston, S. Uttarkar, P. Savitsky, J. M. Elkins, P. Filippakopo T. Krojer, P. Rellos, O. Fedorov, J. Eswaran, B. Brenner, T. Keates, S. O. King, R. Chalk, G. Berridge, F. Von Delft, O. Gileadi, C. H. Arrowsm A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp, Structural Genomics Consortium (Sgc)

Date :   31 Aug 10 (Deposition) - 22 Sep 10 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Adenosine Triphosphate, Amino Acid Sequence, Binding Sites, Catalytic Domain, Models, Molecular, Molecular Sequence Data, Phosphotransferases, Protein Conformation, Protein Folding, Surface Entropy Reduction, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. K. Allerston, S. Uttarkar, P. Savitsky, J. M. Elkins, P. Filippakopoulos, T. Krojer, P. Rellos, O. Fedorov, J. Eswaran, B. Brenner, T. Keates, S. Das, O. King, R. Chalk, G. Berridge, F. Von Delft, O. Gileadi, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S. Knapp
Human Vaccinia-Related Kinase 1
To Be Published
PubMed: search

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE VRK1
	Chains	:	A, B, C, D
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)-R3-PRARE2
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	KINASE DOMAIN, RESIDUES 3-369
	Gene	:	VRK1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	VACCINIA-RELATED KINASE 1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	2	Ligand/Ion	GLYCEROL
3	REB	4	Ligand/Ion	[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	1	Ligand/Ion	GLYCEROL
3	REB	1	Ligand/Ion	[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	1	Ligand/Ion	GLYCEROL
3	REB	1	Ligand/Ion	[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	-1	Ligand/Ion	GLYCEROL
3	REB	1	Ligand/Ion	[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	-1	Ligand/Ion	GLYCEROL
3	REB	1	Ligand/Ion	[4-({4-[(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETONITRILE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:43 , GLY A:44 , GLN A:45 , PHE A:48 , ILE A:51 , VAL A:69 , TYR A:87 , MET A:131 , ASP A:132 , ARG A:133 , PHE A:134 , HOH A:368 , HOH A:487	BINDING SITE FOR RESIDUE REB A 365
02	AC2	SOFTWARE	GLN A:139 , ALA A:180 , PHE A:227 , CYS A:250 , GLN A:253 , TRP A:254 , HOH A:412	BINDING SITE FOR RESIDUE EDO A 366
03	AC3	SOFTWARE	LYS A:85 , ARG A:89 , HOH A:427 , HOH A:456 , HOH C:532	BINDING SITE FOR RESIDUE GOL A 367
04	AC4	SOFTWARE	GLY B:44 , GLN B:45 , PHE B:48 , ILE B:51 , VAL B:69 , LYS B:71 , TYR B:87 , MET B:131 , ASP B:132 , ARG B:133 , PHE B:134 , HOH B:369	BINDING SITE FOR RESIDUE REB B 365
05	AC5	SOFTWARE	ARG B:89 , HOH B:370 , HOH B:447 , HOH D:411	BINDING SITE FOR RESIDUE GOL B 366
06	AC6	SOFTWARE	SER B:229 , ILE B:230 , ASP B:231 , ARG B:241 , GLU B:245 , ARG B:279 , HOH B:395	BINDING SITE FOR RESIDUE EDO B 367
07	AC7	SOFTWARE	ILE C:43 , GLY C:44 , ILE C:51 , VAL C:69 , MET C:131 , ASP C:132 , ARG C:133 , PHE C:134 , HOH C:369 , HOH C:449	BINDING SITE FOR RESIDUE REB C 365
08	AC8	SOFTWARE	SER C:229 , ILE C:230 , ASP C:231 , GLU C:245 , ARG C:279 , HOH C:399	BINDING SITE FOR RESIDUE EDO C 366
09	AC9	SOFTWARE	LYS A:85 , GLN A:88 , ARG A:89 , LYS A:92 , ASP C:310 , GLU C:313 , EDO C:368	BINDING SITE FOR RESIDUE EDO C 367
10	BC1	SOFTWARE	ASP C:310 , THR C:312 , GLU C:313 , EDO C:367	BINDING SITE FOR RESIDUE EDO C 368
11	BC2	SOFTWARE	ILE D:43 , ILE D:51 , VAL D:69 , MET D:131 , ASP D:132 , ARG D:133 , PHE D:134 , HOH D:366	BINDING SITE FOR RESIDUE REB D 365

(no "SS Bond" information available for 3OP5)

Asymmetric Unit

No.	Residues
1	Val D:25	-	Gly D:26

(no "SAP(SNP)/Variant" information available for 3OP5)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	VRK1_HUMAN	43-71	4	A:43-71 B:43-71 C:43-71 D:43-71
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	VRK1_HUMAN	173-185	4	A:173-185 B:173-185 C:173-185 D:173-185

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	VRK1_HUMAN	43-71	1	A:43-71 - - -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	VRK1_HUMAN	173-185	1	A:173-185 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	VRK1_HUMAN	43-71	1	- B:43-71 - -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	VRK1_HUMAN	173-185	1	- B:173-185 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	VRK1_HUMAN	43-71	1	- - C:43-71 -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	VRK1_HUMAN	173-185	1	- - C:173-185 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	VRK1_HUMAN	43-71	1	- - - D:43-71
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	VRK1_HUMAN	173-185	1	- - - D:173-185

(no "Exon" information available for 3OP5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:320
 aligned with VRK1_HUMAN | Q99986 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:321
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
           VRK1_HUMAN    21 EQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeeee....-..eeeeeee...........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee......eee......ee.hhhhh...................hhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3op5 A  21 EQFAVGEIITDMAAAAWKVGLPIGQG-FGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
                                    30        40     | |50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
                                                    46 |                                                                                                                                                                                                                                                                                                     
                                                      48

Chain B from PDB  Type:PROTEIN  Length:319
 aligned with VRK1_HUMAN | Q99986 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:321
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
           VRK1_HUMAN    21 EQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeeee...--..eeeeeee...........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee......eee......ee.hhhhh...................hhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3op5 B  21 EQFAVGEIITDMAAAAWKVGLPIGQ--FGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
                                    30        40    |  |50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
                                                   45 48

Chain C from PDB  Type:PROTEIN  Length:308
 aligned with VRK1_HUMAN | Q99986 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:320
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
           VRK1_HUMAN    22 QFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.....eeeeeeeee..--.eeeeeee....---....eeeee.------hhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee..-.eeeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee......eee......ee.hhhhh...................hhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3op5 C  22 QFAVGEIITDMAAAAWKVGLPIGQG--GCIYLADMNSSE---SDAPCVVKVE------LFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKN-KSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
                                    31        41    |  |51        |-  |     71 |      81        91       101       111       121| |    131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
                                                   46 49         60  64       73     80                                       122 |                                                                                                                                                                                                                         
                                                                                                                                124

Chain D from PDB  Type:PROTEIN  Length:302
 aligned with VRK1_HUMAN | Q99986 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:317
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       
           VRK1_HUMAN    25 VGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------Pkinase      -3op5D01      D:37-325                                                                                                                                                                                                                                                              ---------------- Pfam domains (1)
           Pfam domains (2) ------------Pkinase      -3op5D02      D:37-325                                                                                                                                                                                                                                                              ---------------- Pfam domains (2)
           Pfam domains (3) ------------Pkinase      -3op5D03      D:37-325                                                                                                                                                                                                                                                              ---------------- Pfam domains (3)
           Pfam domains (4) ------------Pkinase      -3op5D04      D:37-325                                                                                                                                                                                                                                                              ---------------- Pfam domains (4)
         Sec.struct. author ...eee.....eeeeeee.------.eeeeee..-----....eeeeeee.---hhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeee.-....eeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee......eee......ee.hhhhh......hhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3op5 D  25 VGEIITDMAAAAWKVGLPI------CIYLADMNS-----SDAPCVVKVEPS---PLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHD-NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341
                                    34        |-     |  54   |    64        74|   |   84        94       104       114     | 124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       
                                             43     50      58    64         75  79                                      120 |                                                                                                                                                                                                                           
                                                                                                                           122

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3OP5)

(no "CATH Domain" information available for 3OP5)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PKinase (934)

Family: Pkinase (680)

Homo sapiens (Human) (521)

1a	Pkinase-3op5D01	D:37-325
1b	Pkinase-3op5D02	D:37-325
1c	Pkinase-3op5D03	D:37-325
1d	Pkinase-3op5D04	D:37-325

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (VRK1_HUMAN | Q99986)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0035175	histone kinase activity (H3-S10 specific)	Catalysis of the transfer of a phosphate group to the serine-10 residue of the N-terminal tail of histone H3.
	GO:0072354	histone kinase activity (H3-T3 specific)	Catalysis of the transfer of a phosphate group to the threonine-3 residue of the N-terminal tail of histone H3.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0031493	nucleosomal histone binding	Interacting selectively and non-covalently with a histone that is assembled into a nucleosome.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0019901	protein kinase binding	Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0090166	Golgi disassembly	A cellular process that results in the breakdown of a Golgi apparatus that contributes to Golgi inheritance.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0043987	histone H3-S10 phosphorylation	The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone.
	GO:0072355	histone H3-T3 phosphorylation	The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 3 of the histone.
	GO:0007077	mitotic nuclear envelope disassembly	The cell cycle process in which the controlled breakdown of the nuclear envelope during mitotic cell division occurs.
	GO:0007084	mitotic nuclear envelope reassembly	The cell cycle process that results in reformation of the nuclear envelope during mitotic cell division.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0046777	protein autophosphorylation	The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0008360	regulation of cell shape	Any process that modulates the surface configuration of a cell.
cellular component
	GO:0005795	Golgi stack	The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005819	spindle	The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.

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(no "Related Entries Specified in the PDB File" available for 3OP5)

Description

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Ligands, Modified Residues, Ions (3, 11)

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