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(-) Description

Title :  POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH CTP
 
Authors :  P. Gong, O. B. Peersen
Date :  25 Aug 10  (Deposition) - 22 Dec 10  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Rna-Dependent Rna Polymerase, Elongation Complex, Virus, Protein-Rna Complex, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Gong, O. B. Peersen
Structural Basis For Active Site Closure By The Poliovirus Rna-Dependent Rna Polymerase.
Proc. Natl. Acad. Sci. Usa V. 107 22505 2010
PubMed-ID: 21148772  |  Reference-DOI: 10.1073/PNAS.1007626107

(-) Compounds

Molecule 1 - POLYMERASE
    Chains: A, E, I, M
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1749-2209
    Gene: 3D
    Mutation: YES
    Organism Scientific: HUMAN POLIOVIRUS 1
    Organism Taxid: 12080
    Strain: MAHONEY
 
Molecule 2 - RNA (5'- R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP* GP*AP*AP*A)-3')
    Chains: B, F, J, N
    Engineered: YES
    Other Details: TEMPLATE RNA
    Other Details - Source: RNA PREPARED BY T7 RNA POLYMERASE TRANSCRIPTION FOLLOWED BY GLMS RIBOZYME SELF-CLEAVAGE
    Synthetic: YES
 
Molecule 3 - RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)- 3')
    Chains: C, G, K, O
    Engineered: YES
    Other Details: PRODUCT RNA
    Other Details - Source: 5' PORTION WAS GENERATED BY CHEMICAL SYNTHESIS. THE 3'-PENTANUCLEOTIDE WAS ADDED TO THE RNA CHAIN BY POLIOVIRUS RNA- DEPENDENT RNA POLYMERASE
    Synthetic: YES
 
Molecule 4 - RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')
    Chains: D, H, L, P
    Engineered: YES
    Other Details: NONTEMPLATE RNA
    Other Details - Source: RNA PREPARED BY T7 RNA POLYMERASE TRANSCRIPTION FOLLOWED BY GLMS RIBOZYME SELF-CLEAVAGE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCD            
Biological Unit 2 (1x):     EFGH        
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 41)

Asymmetric Unit (6, 41)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2IPA15Ligand/IonISOPROPYL ALCOHOL
3MG6Ligand/IonMAGNESIUM ION
4PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
5POP4Ligand/IonPYROPHOSPHATE 2-
6ZN4Ligand/IonZINC ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2IPA4Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5POP1Ligand/IonPYROPHOSPHATE 2-
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2IPA4Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5POP1Ligand/IonPYROPHOSPHATE 2-
6ZN-1Ligand/IonZINC ION
Biological Unit 3 (4, 9)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2IPA2Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5POP1Ligand/IonPYROPHOSPHATE 2-
6ZN-1Ligand/IonZINC ION
Biological Unit 4 (4, 9)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2IPA5Ligand/IonISOPROPYL ALCOHOL
3MG-1Ligand/IonMAGNESIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5POP1Ligand/IonPYROPHOSPHATE 2-
6ZN-1Ligand/IonZINC ION

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:233 , TYR A:234 , ASP A:328 , POP A:5004 , C C:702BINDING SITE FOR RESIDUE MG A 3005
02AC2SOFTWAREASP A:233 , ASP A:328 , ASP A:329 , A C:701 , C C:702BINDING SITE FOR RESIDUE MG A 3006
03AC3SOFTWAREARG A:163 , LYS A:167 , ARG A:174 , GLY A:236 , TYR A:237 , HOH A:585 , HOH A:588 , MG A:3005 , C C:702BINDING SITE FOR RESIDUE POP A 5004
04AC4SOFTWAREGLY A:211 , CYS A:212 , ASP A:213 , PHE A:217 , LYS A:220BINDING SITE FOR RESIDUE IPA A 6009
05AC5SOFTWARETYR A:313 , ILE A:316 , HIS A:336BINDING SITE FOR RESIDUE IPA A 6011
06AC6SOFTWAREMET A:6 , GLU A:11BINDING SITE FOR RESIDUE IPA A 6025
07AC7SOFTWARESER A:28 , ALA A:29 , THR A:404 , ASP A:406 , ASN A:409 , THR A:410 , HIS A:413 , HOH A:475 , HOH A:581BINDING SITE FOR RESIDUE PEG A 7001
08AC8SOFTWAREHIS A:270 , HIS A:272 , CYS A:281BINDING SITE FOR RESIDUE ZN A 2001
09AC9SOFTWAREASP E:233 , ASP E:328 , ASP E:329 , A G:701 , C G:702BINDING SITE FOR RESIDUE MG E 3002
10BC1SOFTWAREASP E:233 , TYR E:234 , ASP E:328 , POP E:5003 , C G:702BINDING SITE FOR RESIDUE MG E 3003
11BC2SOFTWAREARG E:163 , LYS E:167 , ARG E:174 , TYR E:234 , GLY E:236 , TYR E:237 , MG E:3003 , C G:702BINDING SITE FOR RESIDUE POP E 5003
12BC3SOFTWARETYR E:313 , ILE E:316 , HIS E:336 , HOH E:497BINDING SITE FOR RESIDUE IPA E 6010
13BC4SOFTWARETHR E:135 , ASP E:137BINDING SITE FOR RESIDUE IPA E 6013
14BC5SOFTWARECYS E:212 , ASP E:213 , PHE E:217 , HOH E:491BINDING SITE FOR RESIDUE IPA E 6014
15BC6SOFTWAREGLY E:203 , VAL E:204 , ILE E:205 , LEU E:224 , HOH E:490 , HOH E:528BINDING SITE FOR RESIDUE IPA E 6015
16BC7SOFTWARESER E:28 , ALA E:29 , THR E:404 , ASP E:406 , ASN E:409 , THR E:410 , HIS E:413 , HOH G:45BINDING SITE FOR RESIDUE PEG E 7002
17BC8SOFTWAREMET E:6 , GLU E:11BINDING SITE FOR RESIDUE GOL E 8008
18BC9SOFTWARETRP E:5 , HIS E:272 , CYS E:281BINDING SITE FOR RESIDUE ZN E 2002
19CC1SOFTWAREASP I:233 , TYR I:234 , ASP I:328 , C K:702 , POP K:5002BINDING SITE FOR RESIDUE MG I 3004
20CC2SOFTWAREGLU E:69 , ASP E:71 , ARG I:7BINDING SITE FOR RESIDUE IPA I 6012
21CC3SOFTWARELYS E:66 , ARG I:7 , GLU I:11BINDING SITE FOR RESIDUE IPA I 6023
22CC4SOFTWAREASN I:151 , LEU I:152 , PRO I:153 , LEU I:154 , HIS I:270 , SER I:271 , HIS I:272 , HOH I:613BINDING SITE FOR RESIDUE GOL I 8002
23CC5SOFTWARELYS I:228 , LEU I:229 , GLU I:337 , VAL I:338 , THR I:365 , VAL I:366 , GOL I:8004BINDING SITE FOR RESIDUE GOL I 8003
24CC6SOFTWAREALA I:231 , ASP I:339 , ALA I:340 , PHE I:363 , GLU I:364 , VAL I:366 , HOH I:612 , GOL I:8003BINDING SITE FOR RESIDUE GOL I 8004
25CC7SOFTWARESER I:28 , ALA I:29 , PHE I:30 , THR I:404 , PRO I:407 , THR I:410 , HIS I:413 , HOH I:523 , HOH I:541 , HOH I:614BINDING SITE FOR RESIDUE GOL I 8006
26CC8SOFTWARETRP I:5 , HIS I:270 , HIS I:272 , CYS I:281 , HOH I:504BINDING SITE FOR RESIDUE ZN I 2003
27CC9SOFTWAREU J:605 , C J:606BINDING SITE FOR RESIDUE PEG J 7003
28DC1SOFTWARECYS I:212 , TYR I:326 , U J:603 , C J:604 , HOH K:211 , G K:700BINDING SITE FOR RESIDUE GOL J 8005
29DC2SOFTWAREARG I:163 , ARG I:174 , GLY I:236 , TYR I:237 , MG I:3004 , HOH K:358 , C K:702BINDING SITE FOR RESIDUE POP K 5002
30DC3SOFTWAREASP M:233 , TYR M:234 , ASP M:328 , POP M:5001 , C O:702BINDING SITE FOR RESIDUE MG M 3001
31DC4SOFTWAREARG M:163 , LYS M:167 , ARG M:174 , GLY M:236 , TYR M:237 , HOH M:562 , MG M:3001 , C O:702BINDING SITE FOR RESIDUE POP M 5001
32DC5SOFTWAREGLU A:69 , ASP A:71BINDING SITE FOR RESIDUE IPA M 6007
33DC6SOFTWARELYS A:66 , ILE A:67 , ARG M:7 , GLU M:11BINDING SITE FOR RESIDUE IPA M 6016
34DC7SOFTWARETYR M:313 , TYR M:334 , HIS M:336BINDING SITE FOR RESIDUE IPA M 6019
35DC8SOFTWAREMET M:251 , GLU M:254 , LYS M:255BINDING SITE FOR RESIDUE GOL M 8009
36DC9SOFTWARETRP M:5 , HIS M:270 , HIS M:272 , CYS M:281 , HOH M:523BINDING SITE FOR RESIDUE ZN M 2004
37EC1SOFTWAREC N:606 , G N:607 , PEG N:7004BINDING SITE FOR RESIDUE IPA N 6020
38EC2SOFTWAREU N:605 , C N:606 , IPA N:6020BINDING SITE FOR RESIDUE PEG N 7004
39EC3SOFTWARECYS M:212 , TYR M:326 , HOH M:557 , U N:603 , C N:604 , G O:700BINDING SITE FOR RESIDUE GOL N 8010
40EC4SOFTWAREG O:693 , A O:694BINDING SITE FOR RESIDUE IPA O 6021

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OL7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:118 -Pro A:119
2Tyr E:118 -Pro E:119
3Tyr I:118 -Pro I:119
4Tyr M:118 -Pro M:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OL7)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RDRP_SSRNA_POSPS50507 RdRp of positive ssRNA viruses catalytic domain profile.POLG_POL1M1975-2090
 
 
 		  4A:227-342
E:227-342
I:227-342
M:227-342
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RDRP_SSRNA_POSPS50507 RdRp of positive ssRNA viruses catalytic domain profile.POLG_POL1M1975-2090
 
 
 		  1A:227-342
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RDRP_SSRNA_POSPS50507 RdRp of positive ssRNA viruses catalytic domain profile.POLG_POL1M1975-2090
 
 
 		  1-
E:227-342
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RDRP_SSRNA_POSPS50507 RdRp of positive ssRNA viruses catalytic domain profile.POLG_POL1M1975-2090
 
 
 		  1-
-
I:227-342
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RDRP_SSRNA_POSPS50507 RdRp of positive ssRNA viruses catalytic domain profile.POLG_POL1M1975-2090
 
 
 		  1-
-
-
M:227-342

(-) Exons   (0, 0)

(no "Exon" information available for 3OL7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:461
 aligned with B3VQP5_9ENTO | B3VQP5 from UniProtKB/TrEMBL  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
        B3VQP5_9ENTO   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7a_ A: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..ee.....................eeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 A    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain A from PDB  Type:PROTEIN  Length:461
 aligned with POLG_POL1M | P03300 from UniProtKB/Swiss-Prot  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
          POLG_POL1M   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7a_ A: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.........eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..ee.....................eeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRP_SSRNA_POS  PDB: A:227-342 UniProt: 1975-2090                                                                   ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 A    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain B from PDB  Type:DNA/RNA  Length:18
                                                   
                3ol7 B  596 CCAGGUCUCUCGUCCGGA  613
                                   605        


Chain C from PDB  Type:RNA  Length:15
                                                
                3ol7 C  688 GCCCGGACGAGAGAC  702
                                   697     


Chain D from PDB  Type:RNA  Length:3
                                    
                3ol7 D  804 GGA  806


Chain E from PDB  Type:PROTEIN  Length:461
 aligned with B3VQP5_9ENTO | B3VQP5 from UniProtKB/TrEMBL  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
        B3VQP5_9ENTO   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7e_ E: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee.....................eeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 E    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain E from PDB  Type:PROTEIN  Length:461
 aligned with POLG_POL1M | P03300 from UniProtKB/Swiss-Prot  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
          POLG_POL1M   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7e_ E: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee.....................eeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRP_SSRNA_POS  PDB: E:227-342 UniProt: 1975-2090                                                                   ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 E    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain F from PDB  Type:DNA/RNA  Length:18
                                                   
                3ol7 F  596 CCAGGUCUCUCGUCCGGA  613
                                   605        


Chain G from PDB  Type:RNA  Length:15
                                                
                3ol7 G  688 GCCCGGACGAGAGAC  702
                                   697     


Chain H from PDB  Type:RNA  Length:3
                                    
                3ol7 H  804 GGA  806


Chain I from PDB  Type:PROTEIN  Length:461
 aligned with B3VQP5_9ENTO | B3VQP5 from UniProtKB/TrEMBL  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
        B3VQP5_9ENTO   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7i_ I: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhh............ee.hhhh......ee............hhhhhhh...........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...ee.hhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.hhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhh.......hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee................ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 I    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain I from PDB  Type:PROTEIN  Length:461
 aligned with POLG_POL1M | P03300 from UniProtKB/Swiss-Prot  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
          POLG_POL1M   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7i_ I: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhh............ee.hhhh......ee............hhhhhhh...........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...ee.hhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.hhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhh.......hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee................ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRP_SSRNA_POS  PDB: I:227-342 UniProt: 1975-2090                                                                   ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 I    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain J from PDB  Type:RNA  Length:16
                                                 
                3ol7 J  597 CAGGUCUCUCGUCCGG  612
                                   606      


Chain K from PDB  Type:RNA  Length:15
                                                
                3ol7 K  688 GCCCGGACGAGAGAC  702
                                   697     


Chain L from PDB  Type:RNA  Length:4
                                     
                3ol7 L  804 GGAG  807


Chain M from PDB  Type:PROTEIN  Length:461
 aligned with B3VQP5_9ENTO | B3VQP5 from UniProtKB/TrEMBL  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
        B3VQP5_9ENTO   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7m_ M: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------RdRP_1-3ol7M01 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) ----------------RdRP_1-3ol7M02 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) ----------------RdRP_1-3ol7M03 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) ----------------RdRP_1-3ol7M04 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (4)
         Sec.struct. author .eeeee..hhhhh............ee.hhhh......ee............hhhhhhh...........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...ee.hhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.hhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhh.......hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee................ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 M    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain M from PDB  Type:PROTEIN  Length:461
 aligned with POLG_POL1M | P03300 from UniProtKB/Swiss-Prot  Length:2209

    Alignment length:461
                                  1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858      1868      1878      1888      1898      1908      1918      1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208 
          POLG_POL1M   1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209
               SCOP domains d3ol7m_ M: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------RdRP_1-3ol7M01 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) ----------------RdRP_1-3ol7M02 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) ----------------RdRP_1-3ol7M03 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) ----------------RdRP_1-3ol7M04 M:17-460                                                                                                                                                                                                                                                                                                                                                                                                                                     - Pfam domains (4)
         Sec.struct. author .eeeee..hhhhh............ee.hhhh......ee............hhhhhhh...........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...ee.hhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.hhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhh.......hhhhheeeee..eeeeee....hhhhhhhhhhhh...ee................ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDRP_SSRNA_POS  PDB: M:227-342 UniProt: 1975-2090                                                                   ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3ol7 M    1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYRRWLDSF  461
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460 


Chain N from PDB  Type:RNA  Length:16
                                                 
                3ol7 N  597 CAGGUCUCUCGUCCGG  612
                                   606      


Chain O from PDB  Type:RNA  Length:15
                                                
                3ol7 O  688 GCCCGGACGAGAGAC  702
                                   697     


Chain P from PDB  Type:RNA  Length:4
                                     
                3ol7 P  804 GGAG  807
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OL7)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: RdRP (210)
(-)
Family: RdRP_1 (44)
(-)
Human poliovirus 1 (6)
1aRdRP_1-3ol7M01M:17-460
1bRdRP_1-3ol7M02M:17-460
1cRdRP_1-3ol7M03M:17-460
1dRdRP_1-3ol7M04M:17-460

(-) Gene Ontology  (49, 85)

Asymmetric Unit(hide GO term definitions)
Chain A,E,I,M   (B3VQP5_9ENTO | B3VQP5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003724    RNA helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0017111    nucleoside-triphosphatase activity    Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0018144    RNA-protein covalent cross-linking    The formation of a covalent cross-link between RNA and a protein.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0039707    pore formation by virus in membrane of host cell    The aggregation, arrangement and bonding together of a set of components by a virus to form a pore complex in a membrane of a host organism.
    GO:0051259    protein oligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0039694    viral RNA genome replication    The replication of a viral RNA genome.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0044161    host cell cytoplasmic vesicle    A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
    GO:0044162    host cell cytoplasmic vesicle membrane    The lipid bilayer surrounding a host cell cytoplasmic vesicle.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0044385    integral to membrane of host cell    Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. Occurring in a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain A,E,I,M   (POLG_POL1M | P03300)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003724    RNA helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
    GO:0017111    nucleoside-triphosphatase activity    Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0018144    RNA-protein covalent cross-linking    The formation of a covalent cross-link between RNA and a protein.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039520    induction by virus of host autophagy    Any process in which a virus activates or increases the frequency, rate or extent of autophagy in the host.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0039707    pore formation by virus in membrane of host cell    The aggregation, arrangement and bonding together of a set of components by a virus to form a pore complex in a membrane of a host organism.
    GO:0044694    pore-mediated entry of viral genome into host cell    Injection by a non-enveloped virus of the viral genome into the host cytoplasm through creation of a pore or channel in the host cell membrane(s). Usually mediated by a viral pore-forming peptide associated with the viral capsid or bacteriophage tail.
    GO:0039690    positive stranded viral RNA replication    A viral genome replication process where the template genome is positive stranded, single stranded RNA ((+)ssRNA). Replication of the positive strand leads to dsRNA formation, which in turn is transcribed into positive single stranded RNA.
    GO:0051259    protein oligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0039540    suppression by virus of host RIG-I activity    Any process in which a virus stops, prevents, or reduces the activity of RIG-1 (also known as DDX58). The cytoplasmic pattern recognition RIG-I recognizes viral RNA synthesized during active viral replication and signals to protect the host against viral infection, for example by inducing the expression of antiviral cytokines.
    GO:0039544    suppression by virus of host RIG-I activity by RIG-I proteolysis    The chemical reactions and pathways performed by a virus resulting in the hydrolysis of the host RIG-I protein (also known as DDX58) by cleavage of peptide bonds, thereby inhibiting RIG-I signal transduction.
    GO:0039657    suppression by virus of host gene expression    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0039522    suppression by virus of host mRNA export from nucleus    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of movement of mRNA from the nucleus to the cytoplasm in the host organism.
    GO:0039611    suppression by virus of host translation initiation factor activity    Any process in which a virus prevents or reduces the frequency, rate or extent of activity of a host translation initiation factor.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0039694    viral RNA genome replication    The replication of a viral RNA genome.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039618    T=pseudo3 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with pseudo T=3 symmetry. The T=pseudo3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0044161    host cell cytoplasmic vesicle    A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.
    GO:0044162    host cell cytoplasmic vesicle membrane    The lipid bilayer surrounding a host cell cytoplasmic vesicle.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0044385    integral to membrane of host cell    Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. Occurring in a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  POLG_POL1M | P03300
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  2.7.7.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_POL1M | P03300: 1al2 1ar6 1ar7 1ar8 1ar9 1asj 1dgi 1fpt 1hxs 1l1n 1ng7 1nn8 1po1 1po2 1pov 1ra6 1ra7 1raj 1rdr 1tql 1vbd 1xyr 2bbl 2bbp 2ijd 2ijf 2ily 2ilz 2im0 2im1 2im2 2im3 2plv 3epc 3iyb 3iyc 3j3o 3j3p 3j48 3j8f 3j9f 3jbc 3jbd 3jbe 3jbf 3jbg 4dcd 4k4s 4k4t 4k4u 4k4v 4k4w 4nlo 4nlp 4nlq 4nlr 4nls 4nlt 4nlu 4nlv 4nlw 4nlx 4nly 4r0e 5ktz 5ku0 5ku2 5kwl
UniProtKB/TrEMBL
        B3VQP5_9ENTO | B3VQP5: 3ol6 3ol8 3ol9 3ola 3olb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3OL7)