3OKX - JenaLib

Title :   CRYSTAL STRUCTURE OF YAEB-LIKE PROTEIN FROM RHODOPSEUDOMONAS PALUSTRIS

Authors :   C. Chang, E. Evdokimova, F. Liu, A. Savchenko, A. Edwards, A. Joachimia Center For Structural Genomics (Mcsg)

Date :   25 Aug 10 (Deposition) - 08 Sep 10 (Release) - 08 Sep 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Psi-2, Midwest Center For Structural Genomics, Protein Structure Initiative, Mcsg, Unknown Function, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, E. Evdokimova, F. Liu, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Yaeb-Like Protein From Rhodopseudomona Palustris
To Be Published
PubMed: search

Compounds

Molecule 1 - YAEB-LIKE PROTEIN RPA0152
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET DERIVATIVE
	Expression System Strain	:	BL21(DE3)GOLD
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	RPA0152
	Organism Scientific	:	RHODOPSEUDOMONAS PALUSTRIS
	Organism Taxid	:	258594
	Strain	:	CGA009

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:37 , CYS A:40 , PRO A:41 , ARG A:42 , HIS A:43 , TYR A:76 , LEU A:78 , HIS A:79 , ARG A:80 , SER A:81 , ARG A:103 , PRO A:105 , GLY A:112 , THR A:113 , ASP A:132 , CYS A:133 , LEU A:134 , THR A:137 , HOH A:168 , HOH A:216 , HOH A:235 , HOH A:260	BINDING SITE FOR RESIDUE SAM A 201
2	AC2	SOFTWARE	ARG A:146 , LYS A:156 , HOH A:224 , LEU B:37 , CYS B:40 , PRO B:41 , ARG B:42 , HIS B:43 , TYR B:76 , LEU B:78 , HIS B:79 , ARG B:80 , SER B:81 , ARG B:103 , PRO B:105 , GLY B:112 , THR B:113 , ASP B:132 , CYS B:133 , LEU B:134 , THR B:137 , HOH B:191 , HOH B:216	BINDING SITE FOR RESIDUE SAM B 201

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TSAA_2	PS51668	TsaA-like domain profile.	Y152_RHOPA	24-154	2	A:24-154 B:24-151

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:156
 aligned with Y152_RHOPA | Q6NDF6 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:159
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
           Y152_RHOPA     6 DIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHRSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPKPGDFQVGE 164
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee........eee...eeee....hhhhh..........eeeee.hhhhhhhh......eeeeeee.......eeee..---...ee.hhh........eeeeeeeeeeee..eeee........eeeeeeee.hhhh......hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------TSAA_2  PDB: A:24-154 UniProt: 24-154                                                                                              ---------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3okx A   6 DIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHRSRRDLLLQCP---GDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFmPLAPPKPGDFQVGE 164
                                    15        25        35        45        55        65        75        85    |   95       105       115       125       135       145    |  155         
                                                                                                               90  94                                                     150-MSE

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Y152_RHOPA | Q6NDF6 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         
           Y152_RHOPA     3 ATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHRSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMP 151
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee........eee...eeee....hhhhh.........eeeeee.hhhhhhhh......eeeeeee.......eeee........ee.hhh........eeeeeeeeeeee..eeeee.......eeeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------TSAA_2  PDB: B:24-151 UniProt: 24-154                                                                                            PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3okx B   3 ATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHRSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFmP 151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       | 
                                                                                                                                                                             150-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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