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(-) Description

Title :  HELICASE DOMAIN OF REVERSE GYRASE FROM THERMOTOGA MARITIMA
 
Authors :  M. G. Rudolph, D. Klostermeier
Date :  20 Aug 10  (Deposition) - 01 Dec 10  (Release) - 30 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Topoisomerase, Dna Supercoiling, Archaea, Helicase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ganguly, Y. Del Toro Duany, M. G. Rudolph, D. Klostermeier
The Latch Modulates Nucleotide And Dna Binding To The Helicase-Like Domain Of Thermotoga Maritima Reverse Gyrase And Is Required For Positive Dna Supercoiling.
Nucleic Acids Res. V. 39 1789 2011
PubMed-ID: 21051354  |  Reference-DOI: 10.1093/NAR/GKQ1048

(-) Compounds

Molecule 1 - REVERSE GYRASE HELICASE DOMAIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2POP1Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2POP1Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2POP-1Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:103 , VAL A:104 , GLY A:105 , LYS A:106 , THR A:107 , THR A:108 , HOH A:552 , HOH A:559BINDING SITE FOR RESIDUE POP A 1
2AC2SOFTWAREARG A:140BINDING SITE FOR RESIDUE CL A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OIY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:389 -Pro A:460
2Gly B:389 -Pro B:460

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OIY)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....ee.......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh............eeee...........hhhhhhhhh............eeeeee...hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhh...eee...hhhhhhhhhhh....eeeee..................eeeee......hhhhhhhhhhhhh.ee..ee..eeeeee..hhhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oiy A  58 AEFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSER 534
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387 ||    467       477       487       497       507       517       527       
                                                                                                                                                                                                                                                                                                                                                                     389|                                                                          
                                                                                                                                                                                                                                                                                                                                                                      460                                                                          


Chain B from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....ee.......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.............eeee...ee......hhhhhhhh....ee.......eeeeee...hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhh...eee...hhhhhhhhhhh....eeeee............eeeee......hhhhhhhhhhh...ee..ee..eeeeee..hhhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oiy B  59 EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSER 534
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358      |374       384    || 464       474       484       494       504       514       524       534
                                                                                                                                                                                                                                                                                                                                            365|              389|                                                                          
                                                                                                                                                                                                                                                                                                                                             372               460
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OIY)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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