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(-) Description

Title :  STRUCTURE OF YAHD WITH MALIC ACID
 
Authors :  J. Martinez Font, S. Mancini, E. Tauberger, S. Moniot
Date :  16 Aug 10  (Deposition) - 15 Dec 10  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha/Beta Hydrolase, Copper Homeostasis, Malic Acid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Martinez, S. Mancini, E. Tauberger, C. Weise, W. Saenger, M. Solioz
Regulation And Structure Of Yahd, A Copper Inducible Alpha/Beta Hydrolase Of Lactococcus Lactis Il1403
Fems Microbiol. Lett. V. 314 57 2011
PubMed-ID: 21059179  |  Reference-DOI: 10.1111/J.1574-6968.2010.02144.X

(-) Compounds

Molecule 1 - PROTEIN YAHD A COPPER INDUCIBLE HYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YAHD, LL0076, L795, L79507
    Organism Common: STREPTOCOCCUS LACTIS
    Organism Scientific: LACTOCOCCUS LACTIS SUBSP. LACTIS
    Organism Taxid: 272623
    Strain: IL1403

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MLT2Ligand/IonD-MALATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MLT1Ligand/IonD-MALATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MLT1Ligand/IonD-MALATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:22 , ARG A:56 , PHE A:71 , SER A:107 , ASN A:108 , ASN A:111 , HIS A:188 , HOH A:319 , HOH A:348BINDING SITE FOR RESIDUE MLT A 500
2AC2SOFTWARETHR B:22 , ARG B:56 , PHE B:71 , SER B:107 , ASN B:108 , ASN B:111 , HIS B:188 , HOH B:358 , HOH B:396BINDING SITE FOR RESIDUE MLT B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OG9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OG9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OG9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OG9)

(-) Exons   (0, 0)

(no "Exon" information available for 3OG9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with Q9CJC1_LACLA | Q9CJC1 from UniProtKB/TrEMBL  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
         Q9CJC1_LACLA     1 MTDYVFKAGRKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLGHQLMQEEVLAANKWLTETK 206
               SCOP domains d3og9a_ A: automated matches                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeee.........hhhhhhhhh....eeee....hhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeeehhhhhhhhhhhhh......eeeee.................eeeeee.......hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3og9 A   1 MTDYVFKAGRKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLGHQLTQEEVLAAKKWLTETK 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      


Chain B from PDB  Type:PROTEIN  Length:206
 aligned with Q9CJC1_LACLA | Q9CJC1 from UniProtKB/TrEMBL  Length:206

    Alignment length:206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      
         Q9CJC1_LACLA     1 MTDYVFKAGRKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLGHQLMQEEVLAANKWLTETK 206
               SCOP domains d3og9b_ B: automated matches                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------Abhydrolase_5-3og9B01 B:15-191                                                                                                                                                   --------------- Pfam domains (1)
           Pfam domains (2) --------------Abhydrolase_5-3og9B02 B:15-191                                                                                                                                                   --------------- Pfam domains (2)
         Sec.struct. author ...eeee........eeee.........hhhhhhhhh....eeee....hhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh.eeeeehhhhhhhhhhhhh......eeeee.................eeeeee.......hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3og9 B   1 MTDYVFKAGRKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLGHQLTQEEVLAAKKWLTETK 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OG9)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9CJC1_LACLA | Q9CJC1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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