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(-) Description

Title :  NATIVE CRYSTAL STRUCTURE OF TRICHODERMA REESEI BETA-GALACTOSIDASE
 
Authors :  M. Maksimainen, J. Rouvinen
Date :  16 Aug 10  (Deposition) - 16 Mar 11  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel Domain, Glycoside Hydrolase, Family 35, Glycoprotein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Maksimainen, N. Hakulinen, J. M. Kallio, T. Timoharju, O. Turunen, J. Rouvinen
Crystal Structures Of Trichoderma Reesei Beta-Galactosidase Reveal Conformational Changes In The Active Site
J. Struct. Biol. V. 174 156 2011
PubMed-ID: 21130883  |  Reference-DOI: 10.1016/J.JSB.2010.11.024

(-) Compounds

Molecule 1 - BETA-GALACTOSIDASE
    Chains: A
    EC Number: 3.2.1.23
    Organism Common: HYPOCREA JECORINA
    Organism Scientific: TRICHODERMA REESEI
    Organism Taxid: 51453

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 25)

Asymmetric/Biological Unit (5, 25)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2GLC2Ligand/IonALPHA-D-GLUCOSE
3GOL2Ligand/IonGLYCEROL
4MAN11Ligand/IonALPHA-D-MANNOSE
5NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:608 , ASN A:627 , NAG A:1025 , HOH A:1136 , HOH A:1188 , HOH A:1523 , HOH A:1894BINDING SITE FOR RESIDUE NAG A 1024
02AC2SOFTWAREASP A:375 , GLU A:377 , ASN A:577 , NAG A:1024 , BMA A:1026 , HOH A:1167 , HOH A:1263 , HOH A:1438 , HOH A:1562 , HOH A:1618 , HOH A:1794BINDING SITE FOR RESIDUE NAG A 1025
03AC3SOFTWAREGLU A:377 , NAG A:1025 , MAN A:1027 , MAN A:1031 , HOH A:1338 , HOH A:1825 , HOH A:1854BINDING SITE FOR RESIDUE BMA A 1026
04AC4SOFTWAREGLU A:377 , ASN A:573 , BMA A:1026 , MAN A:1028 , HOH A:1369 , HOH A:1392 , HOH A:1724 , HOH A:1898BINDING SITE FOR RESIDUE MAN A 1027
05AC5SOFTWAREHIS A:321 , GLU A:322 , ARG A:325 , ARG A:572 , MAN A:1027 , MAN A:1029 , HOH A:1267 , HOH A:1825 , HOH A:1854BINDING SITE FOR RESIDUE MAN A 1028
06AC6SOFTWAREMAN A:1028 , HOH A:1746BINDING SITE FOR RESIDUE MAN A 1029
07AC7SOFTWAREALA A:317 , ASN A:320 , BMA A:1026 , HOH A:1338 , HOH A:1348 , HOH A:1616 , HOH A:1825 , HOH A:2004BINDING SITE FOR RESIDUE MAN A 1031
08AC8SOFTWAREASN A:930 , THR A:932 , TYR A:951 , VAL A:952 , SER A:953 , ILE A:955 , GLY A:956 , PRO A:957 , GLN A:958 , NAG A:1033 , HOH A:1484 , HOH A:1718 , HOH A:1927 , HOH A:2072BINDING SITE FOR RESIDUE NAG A 1032
09AC9SOFTWAREGLY A:308 , ILE A:955 , NAG A:1032 , BMA A:1034 , HOH A:1231 , HOH A:1564 , HOH A:2010BINDING SITE FOR RESIDUE NAG A 1033
10BC1SOFTWAREPHE A:775 , ASP A:776 , NAG A:1033 , MAN A:1035 , MAN A:1039 , HOH A:1441 , HOH A:1477 , HOH A:1564 , HOH A:1747BINDING SITE FOR RESIDUE BMA A 1034
11BC2SOFTWAREBMA A:1034 , MAN A:1040 , HOH A:1454BINDING SITE FOR RESIDUE MAN A 1039
12BC3SOFTWAREASP A:265 , PRO A:306 , GLY A:308 , TRP A:310 , MAN A:1039 , MAN A:1041 , HOH A:1160 , HOH A:1452 , HOH A:1921BINDING SITE FOR RESIDUE MAN A 1040
13BC4SOFTWAREPRO A:306 , ASP A:776 , ALA A:777 , MAN A:1040 , GLC A:1042 , HOH A:1160 , HOH A:1644 , HOH A:2049BINDING SITE FOR RESIDUE MAN A 1041
14BC5SOFTWAREPHE A:264 , ASP A:265 , PHE A:304 , MAN A:1041 , GLC A:1043 , HOH A:1452 , HOH A:1730 , HOH A:1767 , HOH A:1873 , HOH A:1921BINDING SITE FOR RESIDUE GLC A 1042
15BC6SOFTWAREHIS A:355 , GLU A:809 , GLC A:1042 , HOH A:1278 , HOH A:1818 , HOH A:1873BINDING SITE FOR RESIDUE GLC A 1043
16BC7SOFTWAREPHE A:775 , BMA A:1034 , MAN A:1036 , MAN A:1037 , HOH A:1605 , HOH A:1606BINDING SITE FOR RESIDUE MAN A 1035
17BC8SOFTWAREMAN A:1035 , HOH A:1564BINDING SITE FOR RESIDUE MAN A 1036
18BC9SOFTWAREMAN A:1035 , MAN A:1038BINDING SITE FOR RESIDUE MAN A 1037
19CC1SOFTWAREPHE A:775 , ALA A:777 , MAN A:1037 , NAG A:1045 , HOH A:1359 , HOH A:1440BINDING SITE FOR RESIDUE MAN A 1038
20CC2SOFTWAREARG A:154 , LYS A:156 , ILE A:669 , ASN A:709 , HOH A:1832 , HOH A:1858BINDING SITE FOR RESIDUE NAG A 1044
21CC3SOFTWAREALA A:780 , ASN A:782 , MAN A:1038 , HOH A:1582 , HOH A:1862BINDING SITE FOR RESIDUE NAG A 1045
22CC4SOFTWAREASP A:274 , ASN A:434 , SER A:436 , SER A:437 , THR A:438 , NAG A:1047BINDING SITE FOR RESIDUE NAG A 1046
23CC5SOFTWARESER A:270 , ARG A:468 , NAG A:1046 , HOH A:1432BINDING SITE FOR RESIDUE NAG A 1047
24CC6SOFTWARETYR A:96 , ILE A:139 , ASN A:140 , ALA A:141 , GLU A:142 , ASN A:199 , GLU A:200 , GLU A:298 , TYR A:342BINDING SITE FOR RESIDUE GOL A 1048
25CC7SOFTWAREHIS A:51 , GLY A:335 , TYR A:395 , ILE A:396 , ALA A:398 , LEU A:419 , HOH A:1599BINDING SITE FOR RESIDUE GOL A 1049

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:266 -A:315

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Gly A:136 -Pro A:137
2Phe A:210 -Pro A:211
3Tyr A:342 -Met A:343
4Ile A:456 -Pro A:457
5Gly A:956 -Pro A:957

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OG2)

(-) Exons   (0, 0)

(no "Exon" information available for 3OG2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:986
 aligned with Q70SY0_HYPJE | Q70SY0 from UniProtKB/TrEMBL  Length:1023

    Alignment length:986
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      
        Q70SY0_HYPJE     38 AKGPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKLRTDAPDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNLGHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLYSTAEIFTWNEFAEKTVLVLYGGAQELHEFAVKNPFGSSKTAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVVQLGSLVIYMVDRNSAYNYWVPTLPGSGKQSAYGSSLMNPDSVIINGGYLIRSVAIKGNALSVQADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQVPELTKLKWYKVDSLPEIRSNYDDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGFHAGTLLFRGRFTARTARQQLFLSTQGGSAFASSVWLNDRFIGSFTGFDAASAANSSYTLDRLVRGRRYILTVVVDSTGLDENWTTGDDSMKAPRGILDYALTSSSGANVSISWKLTGNLGGEDYRDVFRGPLNEGGLFFERQGFHLPSPPLSDFTHGPSSSSSSSSPLDGIAHAGIAFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVPEGILDYNGDNWIGVALWALESRGAKVPGLALKSKSPILTGRERVEVVKGPHFKKRHGAY 1023
               SCOP domains d3og2a1 A:38-393 automated matches                                                                                                                                                                                                                                                                                                                                  d3og2a2 A:394-571 automated matches                                                                                                                                               d3og2a3 A:572-668 automated matches                                                              d3og2a4 A:669-852 automated matches                                                                                                                                                     d3og2a5 A:853-1023 automated matches                                                                                                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee....eee..eee.eeeeee.hhhh.hhhhhhhhhhhhhh....eeeee.hhhhhh........hhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhhh.............................eeee....................hhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............................hhhhhhhhhhhhhhhh.hhhhhhee.............eeeeeee.....eeeeeee........eee.eee......eee......eee....eeeeeeeeee..eeeeee..eeeeeee....eeeeeee....eeeeee............eeee....eeee.....eeeeee.....eeeee..eeeeeeehhhhh.ee.........hhhhh.........eee...eeeeeeee..eeeeeee......eeee.......eeee..eee..ee.....eee............hhhhh..eeee.hhhhh.............................hhhhhh.....eeeeeeee.....eeeeeeee......eeeee..eeeeee.......eeeeeeee.......eeeeeeee.............hhhhh..eeeeeeeee........eeeee....................hhhhhhh......hhhhh....................eeeeeeeeeeee.....ee..eeeee........eeeeeee..eeeeeee.......eeee.......eeeeeeeeeeee..........eeeee...ee..................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3og2 A   38 AKGPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKLRTDAPDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNLGHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLYSTAEIFTWNEFAEKTVLVLYGGAQELHEFAVKNPFGSSKTAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVVQLGSLVIYMVDRNSAYNYWVPTLPGSGKQSAYGSSLMNPDSVIINGGYLIRSVAIKGNALSVQADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQVPELTKLKWYKVDSLPEIRSNYDDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGFHAGTLLFRGRFTARTARQQLFLSTQGGSAFASSVWLNDRFIGSFTGFDAASAANSSYTLDRLVRGRRYILTVVVDSTGLDENWTTGDDSMKAPRGILDYALTSSSGANVSISWKLTGNLGGEDYRDVFRGPLNEGGLFFERQGFHLPSPPLSDFTHGPSSSSSSSSPLDGIAHAGIAFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVPEGILDYNGDNWIGVALWALESRGAKVPGLALKSKSPILTGRERVEVVKGPHFKKRHGAY 1023
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 5)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OG2)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q70SY0_HYPJE | Q70SY0)
molecular function
    GO:0004565    beta-galactosidase activity    Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  Cis Peptide Bonds
    Gly A:136 - Pro A:137   [ RasMol ]  
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    Tyr A:342 - Met A:343   [ RasMol ]  
 

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  Q70SY0_HYPJE | Q70SY0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q70SY0_HYPJE | Q70SY0: 3ogr 3ogs 3ogv

(-) Related Entries Specified in the PDB File

3ogr COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH GALACTOSE
3ogs COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH IPTG
3ogv COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH PETG