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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMANPAPILLOMAVIRUS18 (HPV18) CAPSID L1 PENTAMERS BOUND TO HEPARIN OLIGOSACCHARIDES
 
Authors :  X. S. Chen, J. Dasgupta
Date :  15 Aug 10  (Deposition) - 13 Oct 10  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Biol. Unit 3:  K,L,M,N,O  (1x)
Keywords :  Protein Oligosaccharide Complex, Jelly Roll, Capsid Protein, Binds To Host Receptor, Receptor Heparin Oligo Saccharides, Virus Capsid, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Dasgupta, M. Bienkowska-Haba, M. E. Ortega, H. D. Patel, S. Bodevin D. Spillmann, B. Bishop, M. Sapp, X. S. Chen
Structural Basis Of Oligosaccharide Receptor Recognition By Human Papillomavirus.
J. Biol. Chem. V. 286 2617 2011
PubMed-ID: 21115492  |  Reference-DOI: 10.1074/JBC.M110.160184

(-) Compounds

Molecule 1 - L1
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX2T
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 82-465, 499-535
    Gene: L1
    Mutation: YES
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 18
    Organism Taxid: 333761
    Synonym: L1 PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric Unit : ABCDEFGHIJKLMNO
Biological Unit 1 (1x): ABCDE          
Biological Unit 2 (1x):      FGHIJ     
Biological Unit 3 (1x):           KLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 122)

Asymmetric Unit (2, 122)
No.NameCountTypeFull Name
1IDS61Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2JHM61Ligand/Ion2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE
Biological Unit 1 (2, 56)
No.NameCountTypeFull Name
1IDS28Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2JHM28Ligand/Ion2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE
Biological Unit 2 (2, 44)
No.NameCountTypeFull Name
1IDS22Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2JHM22Ligand/Ion2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE
Biological Unit 3 (2, 22)
No.NameCountTypeFull Name
1IDS11Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2JHM11Ligand/Ion2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE

(-) Sites  (122, 122)

Asymmetric Unit (122, 122)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREIDS D:504 , GLN E:273 , IDS E:502BINDING SITE FOR RESIDUE JHM E 501
002AC2SOFTWAREGLN E:273 , LYS E:278 , JHM E:501 , JHM E:505BINDING SITE FOR RESIDUE IDS E 502
003AC3SOFTWAREGLY C:354 , IDS E:502 , IDS E:506BINDING SITE FOR RESIDUE JHM E 505
004AC4SOFTWAREJHM E:505BINDING SITE FOR RESIDUE IDS E 506
005AC5SOFTWAREPRO D:53 , IDS D:504 , THR E:270BINDING SITE FOR RESIDUE JHM D 503
006AC6SOFTWAREJHM D:503 , GLN E:273 , JHM E:501BINDING SITE FOR RESIDUE IDS D 504
007AC7SOFTWAREIDS D:508 , ARG K:30 , GLN K:378BINDING SITE FOR RESIDUE JHM D 507
008AC8SOFTWAREJHM D:507 , JHM D:509 , ASP K:25 , LYS K:315BINDING SITE FOR RESIDUE IDS D 508
009AC9SOFTWAREGLY D:354 , GLN D:355 , IDS D:508 , IDS D:510BINDING SITE FOR RESIDUE JHM D 509
010BC1SOFTWAREGLN A:273 , LYS A:278 , JHM D:509 , GLY O:474BINDING SITE FOR RESIDUE IDS D 510
011BC2SOFTWAREGLY E:172 , THR E:173 , ALA E:174 , IDS E:512 , IDS E:514BINDING SITE FOR RESIDUE JHM E 511
012BC3SOFTWAREJHM E:511BINDING SITE FOR RESIDUE IDS E 512
013BC4SOFTWARELYS E:191 , IDS E:514 , IDS E:516BINDING SITE FOR RESIDUE JHM E 513
014BC5SOFTWAREJHM E:511 , JHM E:513 , THR K:173BINDING SITE FOR RESIDUE IDS E 514
015BC6SOFTWAREPRO E:441 , LYS E:444 , LEU E:445 , IDS E:516BINDING SITE FOR RESIDUE JHM E 515
016BC7SOFTWAREJHM E:513 , JHM E:515BINDING SITE FOR RESIDUE IDS E 516
017BC8SOFTWAREARG A:178 , SER A:181 , IDS A:518 , GLY E:57 , ASN E:58 , THR O:31 , SER O:89 , ILE O:90BINDING SITE FOR RESIDUE JHM A 517
018BC9SOFTWAREASP A:184 , JHM A:517 , JHM A:519 , GLY E:56 , GLY E:57 , LYS E:362 , ASP O:87 , SER O:89 , ILE O:90BINDING SITE FOR RESIDUE IDS A 518
019CC1SOFTWAREIDS A:518 , IDS A:520 , PRO O:86 , ASP O:87BINDING SITE FOR RESIDUE JHM A 519
020CC2SOFTWAREJHM A:519 , LEU O:458BINDING SITE FOR RESIDUE IDS A 520
021CC3SOFTWAREGLY D:281 , IDS D:522BINDING SITE FOR RESIDUE JHM D 521
022CC4SOFTWAREJHM D:521 , JHM D:523 , ASN I:404BINDING SITE FOR RESIDUE IDS D 522
023CC5SOFTWAREGLY B:354 , GLN D:273 , LYS D:278 , IDS D:522 , IDS D:524BINDING SITE FOR RESIDUE JHM D 523
024CC6SOFTWAREJHM D:523 , JHM D:525BINDING SITE FOR RESIDUE IDS D 524
025CC7SOFTWAREIDS D:524 , IDS D:526BINDING SITE FOR RESIDUE JHM D 525
026CC8SOFTWAREJHM D:525 , SER J:181 , GLN J:182 , ASP J:184BINDING SITE FOR RESIDUE IDS D 526
027CC9SOFTWAREIDS B:528 , IDS B:530 , PRO I:179BINDING SITE FOR RESIDUE JHM B 527
028DC1SOFTWARETYR B:49 , LYS B:64 , GLN B:226 , SER B:227 , JHM B:527 , LYS I:176 , SER I:177 , ARG I:178 , PRO I:179BINDING SITE FOR RESIDUE IDS B 528
029DC2SOFTWAREVAL A:352 , LYS B:217 , IDS B:530 , SER C:274 , ILE C:277 , IDS C:532BINDING SITE FOR RESIDUE JHM B 529
030DC3SOFTWARESER B:211 , LYS B:217 , GLN B:226 , JHM B:527 , JHM B:529 , SER C:274BINDING SITE FOR RESIDUE IDS B 530
031DC4SOFTWAREIDS C:532BINDING SITE FOR RESIDUE JHM C 531
032DC5SOFTWAREJHM B:529 , GLN C:273 , JHM C:531BINDING SITE FOR RESIDUE IDS C 532
033DC6SOFTWAREIDS B:534BINDING SITE FOR RESIDUE JHM B 533
034DC7SOFTWARELYS A:59 , ARG B:178 , JHM B:533 , JHM B:535BINDING SITE FOR RESIDUE IDS B 534
035DC8SOFTWAREIDS B:534 , IDS B:536BINDING SITE FOR RESIDUE JHM B 535
036DC9SOFTWAREJHM B:535 , JHM B:537BINDING SITE FOR RESIDUE IDS B 536
037EC1SOFTWAREGLN A:60 , IDS B:536 , IDS B:538BINDING SITE FOR RESIDUE JHM B 537
038EC2SOFTWAREJHM B:537 , JHM B:539BINDING SITE FOR RESIDUE IDS B 538
039EC3SOFTWAREIDS B:538 , IDS B:540BINDING SITE FOR RESIDUE JHM B 539
040EC4SOFTWAREJHM B:539 , JHM B:541BINDING SITE FOR RESIDUE IDS B 540
041EC5SOFTWAREIDS B:540 , IDS B:542 , LYS D:439BINDING SITE FOR RESIDUE JHM B 541
042EC6SOFTWARELYS A:453 , JHM B:541 , LYS D:439BINDING SITE FOR RESIDUE IDS B 542
043EC7SOFTWAREGLN A:349 , PRO A:351 , IDS A:544 , IDS A:546BINDING SITE FOR RESIDUE JHM A 543
044EC8SOFTWARESER A:350 , PRO A:351 , JHM A:543BINDING SITE FOR RESIDUE IDS A 544
045EC9SOFTWAREIDS A:546BINDING SITE FOR RESIDUE JHM A 545
046FC1SOFTWARELYS A:360 , JHM A:543 , JHM A:545BINDING SITE FOR RESIDUE IDS A 546
047FC2SOFTWAREALA A:239 , TYR E:463 , PRO E:464 , IDS E:548BINDING SITE FOR RESIDUE JHM E 547
048FC3SOFTWARESER E:40 , ARG E:41 , ASP E:372 , JHM E:547 , JHM E:549BINDING SITE FOR RESIDUE IDS E 548
049FC4SOFTWAREARG E:41 , IDS E:548 , IDS E:550BINDING SITE FOR RESIDUE JHM E 549
050FC5SOFTWAREGLU A:189 , JHM E:549 , JHM E:551BINDING SITE FOR RESIDUE IDS E 550
051FC6SOFTWAREIDS E:550 , IDS E:552BINDING SITE FOR RESIDUE JHM E 551
052FC7SOFTWAREJHM E:551BINDING SITE FOR RESIDUE IDS E 552
053FC8SOFTWAREPRO I:53 , THR J:270 , IDS J:554BINDING SITE FOR RESIDUE JHM J 553
054FC9SOFTWAREVAL J:271 , PRO J:272 , GLN J:273 , SER J:274 , JHM J:553 , JHM J:555BINDING SITE FOR RESIDUE IDS J 554
055GC1SOFTWAREGLY H:354 , GLN J:273 , SER J:274 , TYR J:276 , ILE J:277 , IDS J:554 , IDS J:556BINDING SITE FOR RESIDUE JHM J 555
056GC2SOFTWAREGLY H:354 , JHM J:555 , JHM J:557BINDING SITE FOR RESIDUE IDS J 556
057GC3SOFTWAREIDS J:556 , IDS J:558BINDING SITE FOR RESIDUE JHM J 557
058GC4SOFTWAREJHM J:557BINDING SITE FOR RESIDUE IDS J 558
059GC5SOFTWARETHR J:173 , IDS J:560 , IDS J:562BINDING SITE FOR RESIDUE JHM J 559
060GC6SOFTWAREJHM J:559BINDING SITE FOR RESIDUE IDS J 560
061GC7SOFTWAREIDS J:562 , IDS J:564BINDING SITE FOR RESIDUE JHM J 561
062GC8SOFTWARELYS C:444 , GLU J:189 , LYS J:191 , JHM J:559 , JHM J:561BINDING SITE FOR RESIDUE IDS J 562
063GC9SOFTWAREPRO J:441 , LYS J:444 , IDS J:564BINDING SITE FOR RESIDUE JHM J 563
064HC1SOFTWARELEU J:445 , JHM J:561 , JHM J:563BINDING SITE FOR RESIDUE IDS J 564
065HC2SOFTWARETHR F:266 , IDS F:566 , IDS F:568BINDING SITE FOR RESIDUE JHM F 565
066HC3SOFTWARESER F:285 , JHM F:565BINDING SITE FOR RESIDUE IDS F 566
067HC4SOFTWAREGLN F:182 , GLY F:183 , IDS F:568 , IDS F:570 , THR J:348BINDING SITE FOR RESIDUE JHM F 567
068HC5SOFTWAREJHM F:565 , JHM F:567BINDING SITE FOR RESIDUE IDS F 568
069HC6SOFTWAREPRO F:179 , LEU F:180 , SER F:181 , IDS F:570BINDING SITE FOR RESIDUE JHM F 569
070HC7SOFTWARESER F:181 , JHM F:567 , JHM F:569 , GLY J:57BINDING SITE FOR RESIDUE IDS F 570
071HC8SOFTWAREIDS C:572 , GLY G:354BINDING SITE FOR RESIDUE JHM C 571
072HC9SOFTWAREASN C:92 , GLU C:94 , THR C:95 , THR C:383 , JHM C:571 , JHM C:573BINDING SITE FOR RESIDUE IDS C 572
073IC1SOFTWAREIDS C:572 , IDS C:574BINDING SITE FOR RESIDUE JHM C 573
074IC2SOFTWAREARG C:178 , JHM C:573BINDING SITE FOR RESIDUE IDS C 574
075IC3SOFTWARESER H:274 , IDS H:576 , IDS H:578BINDING SITE FOR RESIDUE JHM H 575
076IC4SOFTWARELYS G:64 , GLN G:226 , SER G:227 , JHM H:575BINDING SITE FOR RESIDUE IDS H 576
077IC5SOFTWAREVAL F:352 , PRO F:353 , LYS G:217 , ILE H:277 , IDS H:578 , IDS H:580BINDING SITE FOR RESIDUE JHM H 577
078IC6SOFTWARELYS G:217 , GLN G:226 , SER H:274 , JHM H:575 , JHM H:577BINDING SITE FOR RESIDUE IDS H 578
079IC7SOFTWAREPRO F:351 , GLY F:354 , JHM F:591 , IDS H:580BINDING SITE FOR RESIDUE JHM H 579
080IC8SOFTWARELYS H:278 , JHM H:577 , JHM H:579BINDING SITE FOR RESIDUE IDS H 580
081IC9SOFTWAREGLY F:57 , IDS F:582 , ARG G:178BINDING SITE FOR RESIDUE JHM F 581
082JC1SOFTWAREJHM F:581 , JHM F:583BINDING SITE FOR RESIDUE IDS F 582
083JC2SOFTWAREIDS F:582 , IDS F:584 , PRO M:53BINDING SITE FOR RESIDUE JHM F 583
084JC3SOFTWARELYS F:59 , JHM F:583 , JHM F:585 , ARG M:51 , PRO M:53 , ALA M:54 , ASP M:61BINDING SITE FOR RESIDUE IDS F 584
085JC4SOFTWAREGLN F:60 , IDS F:584 , IDS F:586BINDING SITE FOR RESIDUE JHM F 585
086JC5SOFTWAREJHM F:585 , JHM F:587 , LYS M:446BINDING SITE FOR RESIDUE IDS F 586
087JC6SOFTWAREIDS F:586 , IDS F:588 , THR M:44 , TRP M:448BINDING SITE FOR RESIDUE JHM F 587
088JC7SOFTWAREJHM F:587 , JHM F:589 , TRP M:448 , ASN M:449BINDING SITE FOR RESIDUE IDS F 588
089JC8SOFTWAREIDS F:588 , IDS F:590BINDING SITE FOR RESIDUE JHM F 589
090JC9SOFTWARELYS F:453 , JHM F:589BINDING SITE FOR RESIDUE IDS F 590
091KC1SOFTWAREGLN F:349 , PRO F:351 , IDS F:592 , IDS F:594 , JHM H:579BINDING SITE FOR RESIDUE JHM F 591
092KC2SOFTWARESER F:350 , PRO F:351 , JHM F:591 , ASP G:87 , THR G:88BINDING SITE FOR RESIDUE IDS F 592
093KC3SOFTWAREIDS F:594BINDING SITE FOR RESIDUE JHM F 593
094KC4SOFTWARELYS F:360 , JHM F:591 , JHM F:593 , LEU G:85 , PRO G:86 , ASP G:87BINDING SITE FOR RESIDUE IDS F 594
095KC5SOFTWAREIDS J:596 , IDS J:598BINDING SITE FOR RESIDUE JHM J 595
096KC6SOFTWARESER F:175 , SER F:177 , ARG F:178 , CYS F:185 , PRO F:186 , PRO F:187 , ASN J:58 , LYS J:59 , JHM J:595BINDING SITE FOR RESIDUE IDS J 596
097KC7SOFTWARELEU J:43 , THR J:44 , IDS J:598 , IDS J:600BINDING SITE FOR RESIDUE JHM J 597
098KC8SOFTWARETHR J:44 , VAL J:45 , GLY J:46 , JHM J:595 , JHM J:597BINDING SITE FOR RESIDUE IDS J 598
099KC9SOFTWAREARG J:51 , LYS J:446 , IDS J:600BINDING SITE FOR RESIDUE JHM J 599
100LC1SOFTWAREJHM J:597 , JHM J:599BINDING SITE FOR RESIDUE IDS J 600
101LC2SOFTWAREVAL N:52 , PRO N:53 , GLY N:56 , IDS N:602 , THR O:270BINDING SITE FOR RESIDUE JHM N 601
102LC3SOFTWAREPRO N:53 , JHM N:601 , JHM O:603BINDING SITE FOR RESIDUE IDS N 602
103LC4SOFTWAREIDS N:602 , SER O:274 , IDS O:604BINDING SITE FOR RESIDUE JHM O 603
104LC5SOFTWAREGLN O:273 , SER O:274 , JHM O:603 , JHM O:605BINDING SITE FOR RESIDUE IDS O 604
105LC6SOFTWAREVAL M:352 , IDS O:604 , IDS O:606BINDING SITE FOR RESIDUE JHM O 605
106LC7SOFTWAREJHM O:605BINDING SITE FOR RESIDUE IDS O 606
107LC8SOFTWARETYR N:91 , ASN N:92 , GLN N:96 , PRO N:351 , VAL N:352 , THR N:383 , IDS N:608BINDING SITE FOR RESIDUE JHM N 607
108LC9SOFTWAREASN N:92 , THR N:95 , GLN N:349 , SER N:350 , PRO N:351 , JHM N:607 , JHM N:609BINDING SITE FOR RESIDUE IDS N 608
109MC1SOFTWARESER N:350 , IDS N:608 , IDS N:610 , GLN O:182BINDING SITE FOR RESIDUE JHM N 609
110MC2SOFTWAREJHM N:609 , SER O:181BINDING SITE FOR RESIDUE IDS N 610
111MC3SOFTWAREIDS L:612 , IDS L:614 , GLU O:94BINDING SITE FOR RESIDUE JHM L 611
112MC4SOFTWAREALA L:174 , SER L:175 , LYS L:176 , JHM L:611 , GLU O:94BINDING SITE FOR RESIDUE IDS L 612
113MC5SOFTWAREASP L:87 , SER L:89 , IDS L:614 , IDS L:616BINDING SITE FOR RESIDUE JHM L 613
114MC6SOFTWARESER L:181 , GLN L:182 , JHM L:611 , JHM L:613 , JHM L:617BINDING SITE FOR RESIDUE IDS L 614
115MC7SOFTWARETHR L:88 , IDS L:616 , GLU O:401 , ASN O:438BINDING SITE FOR RESIDUE JHM L 615
116MC8SOFTWARETHR L:88 , JHM L:613 , JHM L:615 , GLU O:401 , ASP O:402 , TRP O:403BINDING SITE FOR RESIDUE IDS L 616
117MC9SOFTWARESER L:181 , IDS L:614 , IDS L:618BINDING SITE FOR RESIDUE JHM L 617
118NC1SOFTWAREARG L:178 , JHM L:617 , JHM L:619BINDING SITE FOR RESIDUE IDS L 618
119NC2SOFTWARELYS K:59 , ARG L:178 , IDS L:618 , IDS L:620BINDING SITE FOR RESIDUE JHM L 619
120NC3SOFTWAREJHM L:619 , JHM L:621BINDING SITE FOR RESIDUE IDS L 620
121NC4SOFTWAREIDS L:620 , IDS L:622BINDING SITE FOR RESIDUE JHM L 621
122NC5SOFTWAREJHM L:621BINDING SITE FOR RESIDUE IDS L 622

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OFL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OFL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OFL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OFL)

(-) Exons   (0, 0)

(no "Exon" information available for 3OFL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl A  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain B from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl B  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain C from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl C  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain D from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl D  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain E from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl E  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain F from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.......................................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl F  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain G from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh......................................hhh..............................hhh.........................hhhhhhhhhhhhhhhhhhhh---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl G  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain H from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh.......................................hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl H  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain I from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl I  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain J from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl J  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain K from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl K  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain L from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl L  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain M from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh......hhhhh.......hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh.---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl M  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain N from PDB  Type:PROTEIN  Length:422
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhhh---------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl N  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDWN---------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399    |    -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                          404                               438                                    


Chain O from PDB  Type:PROTEIN  Length:421
 aligned with Q80B70_HPV18 | Q80B70 from UniProtKB/TrEMBL  Length:568

    Alignment length:455
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530     
         Q80B70_HPV18    81 RVVNTDDYVTRTSIFYHAGSSRLLTVGNPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTACKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIHSMNSSILEDWNFGVPPPPTTSLVDTYRFVQSVAITCQKDAAPAENKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 535
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Late_protein_L1-3oflO01 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) -Late_protein_L1-3oflO02 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) -Late_protein_L1-3oflO03 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) -Late_protein_L1-3oflO04 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
           Pfam domains (5) -Late_protein_L1-3oflO05 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (5)
           Pfam domains (6) -Late_protein_L1-3oflO06 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (6)
           Pfam domains (7) -Late_protein_L1-3oflO07 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (7)
           Pfam domains (8) -Late_protein_L1-3oflO08 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (8)
           Pfam domains (9) -Late_protein_L1-3oflO09 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (9)
          Pfam domains (10) -Late_protein_L1-3oflO10 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (10)
          Pfam domains (11) -Late_protein_L1-3oflO11 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (11)
          Pfam domains (12) -Late_protein_L1-3oflO12 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (12)
          Pfam domains (13) -Late_protein_L1-3oflO13 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (13)
          Pfam domains (14) -Late_protein_L1-3oflO14 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (14)
          Pfam domains (15) -Late_protein_L1-3oflO15 O:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (15)
         Sec.struct. author ...hhhhh.....................................................................................................................................................................................hhhhhh..................hhhhhhhh...............................hhhhh...hhhhhh.................hhh...................................................hhh.........................hhhhhhhhhhhhhhhhhhh----------------------------------.....................hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ofl O  20 AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPDPNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNVSEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGDMVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARHFWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGHNNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQLCTITLTADVMSYIQSMNSSILEDW----------------------------------NKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQAG 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OFL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OFL)

(-) Pfam Domains  (1, 15)

Asymmetric Unit
(-)
Clan: no clan defined [family: Late_protein_L1] (6)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O   (Q80B70_HPV18 | Q80B70)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039620    T=7 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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        Q80B70_HPV18 | Q80B70: 2r5i

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2r5i PENTAMER STRUCTURE OF MAJOR CAPSID PROTEIN L1 OF HUMAN PAPILLOMA VIRUS TYPE 18