3OFG - JenaLib

Title :   STRUCTURED DOMAIN OF CAENORHABDITIS ELEGANS BMY-1

Authors :   M. N. Collins, W. A. Hendrickson

Date :   14 Aug 10 (Deposition) - 02 Mar 11 (Release) - 02 Mar 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.37

Chains :   Asym./Biol. Unit : A,B

Keywords :   Molecular Chaperone, Protein Folding, Ywtd Propeller, Ldlr, Lrp, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. N. Collins, W. A. Hendrickson
Structural Characterization Of The Boca/Mesd Maturation Factors For Ldl-Receptor-Type Beta-Propeller Domains
Structure 2011
PubMed: search

Compounds

Molecule 1 - BOCA/MESD CHAPERONE FOR YWTD BETA-PROPELLER-EGF PROTEIN 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	SEQUENCE DATABASE RESIDUES 84-174
	Gene	:	BMY-1, F09E5.17
	Organism Common	:	NEMATODE
	Organism Scientific	:	CAENORHABDITIS ELEGANS
	Organism Taxid	:	6239

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 8)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:170 , PHE A:172 , ASP A:173 , GLY A:174 , GLN B:119 , VAL B:131	BINDING SITE FOR RESIDUE CL A 1
2	AC2	SOFTWARE	LYS A:153 , THR A:166 , ILE A:167 , THR B:166 , ILE B:167	BINDING SITE FOR RESIDUE CL A 2
3	AC3	SOFTWARE	HOH A:18 , ASN A:124 , HOH A:209	BINDING SITE FOR RESIDUE CL A 3
4	AC4	SOFTWARE	GLN A:119 , GLN A:130 , VAL A:131	BINDING SITE FOR RESIDUE CL A 4

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Q8IG33_CAEEL | Q8IG33 from UniProtKB/TrEMBL  Length:186

    Alignment length:91
                                    93       103       113       123       133       143       153       163       173 
         Q8IG33_CAEEL    84 SKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..........hhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeee.hhhhhhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 3ofg A  84 SKKGQTLmLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFmFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
                                   |93       103       113       123       133       143       153       163       173 
                                  91-MSE                                            142-MSE

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q8IG33_CAEEL | Q8IG33 from UniProtKB/TrEMBL  Length:186

    Alignment length:87
                                    97       107       117       127       137       147       157       167       
         Q8IG33_CAEEL    88 QTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Mesd-3ofgB01 B:88-174                                                                   Pfam domains (1)
           Pfam domains (2) Mesd-3ofgB02 B:88-174                                                                   Pfam domains (2)
         Sec.struct. author ..eeeeeee..........hhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee...hhhhhhhhhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3ofg B  88 QTLmLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFmFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 174
                               |    97       107       117       127       137    |  147       157       167       
                              91-MSE                                            142-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Mesd] (8)

Family: Mesd (8)

Caenorhabditis elegans (1)

1a	Mesd-3ofgB01	B:88-174
1b	Mesd-3ofgB02	B:88-174

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2i9s	NMR SOLUTION STRUCTURE OF MESD STRUCTURE DOMAIN
2rqk	NMR SOLUTION STRUCTURE OF MESD
2rqm	NMR SOLUTION STRUCTURE OF MESD
3ofe	ORTHOLOG
3off	ORTHOLOG
3ofh	ORTHOLOG

Description