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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PRP20P FROM SACCHAROMYCES CEREVISIAE AND ITS BINDING PROPERTIES TO GSP1P AND HISTONES
 
Authors :  F. Wu, Y. Liu, Z. Zhu, H. Huang, B. Ding, J. Wu, Y. Shi
Date :  14 Aug 10  (Deposition) - 23 Mar 11  (Release) - 23 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Propeller, Guanine Nucleotide Exchange Factor (Gef), Gsp1P, Histones, Nucleus, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Wu, Y. Liu, Z. Zhu, H. Huang, B. Ding, J. Wu, Y. Shi
The 1. 9A Crystal Structure Of Prp20P From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1P And Histones
J. Struct. Biol. V. 174 213 2011
PubMed-ID: 21093592  |  Reference-DOI: 10.1016/J.JSB.2010.11.016

(-) Compounds

Molecule 1 - REGULATOR OF CHROMOSOME CONDENSATION
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP28
    Expression System StrainBL21-GOLD (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRCC1-LIKE DOMAIN
    GeneMTR1, PRP20, SRM1, YGL097W
    Organism CommonYEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainS288C
    SynonymPROTEIN PRP20, PHEROMONE RESPONSE PATHWAY COMPONENT SRM1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3OF7)

(-) Sites  (0, 0)

(no "Site" information available for 3OF7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OF7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OF7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OF7)

(-) PROSITE Motifs  (3, 9)

Asymmetric/Biological Unit (3, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RCC1_3PS50012 Regulator of chromosome condensation (RCC1) repeat profile.RCC1_YEAST46-102
103-183
184-239
240-292
293-348
349-412
413-467
  7A:46-102
A:103-183
A:184-239
A:240-292
A:293-348
A:349-412
A:413-467
2RCC1_1PS00625 Regulator of chromosome condensation (RCC1) signature 1.RCC1_YEAST109-120  1A:109-120
3RCC1_2PS00626 Regulator of chromosome condensation (RCC1) signature 2.RCC1_YEAST399-409  1A:399-409

(-) Exons   (0, 0)

(no "Exon" information available for 3OF7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:438
 aligned with RCC1_YEAST | P21827 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:459
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   482 
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       | 
           RCC1_YEAST    25 HASHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDD-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCC1_2-3of7A04 A:332-358   -----------------------------------------------------RCC1-3of7A01 A:412-463                              -------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCC1_2-3of7A05 A:332-358   -----------------------------------------------------RCC1-3of7A02 A:412-463                              -------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCC1-3of7A03 A:412-463                              -------------------- Pfam domains (3)
         Sec.struct. author .......hhhhhhhhhh.....eeeeeee..........hhhh.eeeeeee..........eeeeee...eeeeee....eeeee............---------------------.hhhhhh.ee.hhhhhhhhhh...eeeeee...eeeeee....eeeee.eee..eeee........eeeeee........eeeeee...eeeeee....eeeee...........hhhhh......ee.....eeeeee...eeeeee....eeeeee................eeeeeee........eeeeee...eeeeee....eeeeee........hhhhh....ee.....eeeeeeeee......eeeeee...eeeeee....eeeee...............eeeeee........eeeeeeee...eeeeeeee.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------RCC1_3  PDB: A:46-102 UniProt: 46-102                    RCC1_3  PDB: A:103-183 UniProt: 103-183                                          RCC1_3  PDB: A:184-239 UniProt: 184-239                 RCC1_3  PDB: A:240-292 UniProt: 240-292              RCC1_3  PDB: A:293-348 UniProt: 293-348                 RCC1_3  PDB: A:349-412 UniProt: 349-412                         RCC1_3  PDB: A:413-467 UniProt: 413-467                ---------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------RCC1_1      --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCC1_2     -------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3of7 A  25 HMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTS---------------------LNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDDL 483
                                    34        44        54        64        74        84        94       104       114      |  -         -       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474         
                                                                                                                          121                   143                                                                                                                                                                                                                                                                                                                                                    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OF7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OF7)

(-) Pfam Domains  (2, 5)

Asymmetric/Biological Unit

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (RCC1_YEAST | P21827)
molecular function
    GO:0005087    Ran guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ran family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0006407    rRNA export from nucleus    The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins.
    GO:0019236    response to pheromone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
    GO:0000054    ribosomal subunit export from nucleus    The directed movement of a ribosomal subunit from the nucleus into the cytoplasm.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

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        RCC1_YEAST | P218274oih 5hq2

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