3O83 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF BASE N-TERMINAL DOMAIN FROM ACINETOBACTER BAUMANNII BOUND TO 2-(4-N-DODECYL-1,2,3-TRIAZOL-1-YL)-5'-O-[N-(2-HYDROXYBENZOYL) SULFAMOYL]ADENOSINE

Authors :   E. J. Drake, B. P. Duckworth, J. Neres, C. C. Aldrich, A. M. Gulick

Date :   02 Aug 10 (Deposition) - 06 Oct 10 (Release) - 10 Nov 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Ligase, Adenylation Of 2, 3-Dihydroxybenzoate And Transfer To Pantetheine Cofactor Of Basf, Non-Ribosomal Peptide Synthetase (Nrps) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. J. Drake, B. P. Duckworth, J. Neres, C. C. Aldrich, A. M. Gulick
Biochemical And Structural Characterization Of Bisubstrate Inhibitors Of Base, The Self-Standing Nonribosomal Peptide Synthetase Adenylate-Forming Enzyme Of Acinetobactin Synthesis.
Biochemistry V. 49 9292 2010
PubMed-ID: 20853905 | Reference-DOI: 10.1021/BI101226N

Molecule 1 - PEPTIDE ARYLATION ENZYME
	Chains	:	A, B
	EC Number	:	6.2.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PED453
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	BASE
	Gene	:	ACICU_02578, BASE
	Mutation	:	YES
	Organism Scientific	:	ACINETOBACTER BAUMANNII
	Organism Taxid	:	557601
	Strain	:	AB900

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	CA	6	Ligand/Ion	CALCIUM ION
2	IXN	2	Ligand/Ion	2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL)-5'-O-{[(2-HYDROXYPHENYL)CARBONYL]SULFAMOYL}ADENOSINE
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	IXN	1	Ligand/Ion	2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL)-5'-O-{[(2-HYDROXYPHENYL)CARBONYL]SULFAMOYL}ADENOSINE
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MRD	-1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	IXN	1	Ligand/Ion	2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL)-5'-O-{[(2-HYDROXYPHENYL)CARBONYL]SULFAMOYL}ADENOSINE
3	MPD	-1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:198 , HIS A:241 , ASN A:242 , PHE A:243 , SER A:247 , GLY A:314 , ALA A:315 , SER A:316 , VAL A:336 , PHE A:337 , GLY A:338 , MET A:339 , ALA A:340 , GLN A:360 , ASP A:420 , VAL A:432 , HOH A:671 , HOH A:753 , HOH A:754 , HOH A:769 , HOH A:770 , HOH A:771 , HOH A:790 , LYS B:437	BINDING SITE FOR RESIDUE IXN A 800
02	AC2	SOFTWARE	LYS A:437 , HIS B:241 , ASN B:242 , PHE B:243 , SER B:247 , GLY B:314 , ALA B:315 , SER B:316 , VAL B:336 , PHE B:337 , GLY B:338 , MET B:339 , ALA B:340 , ASP B:420 , VAL B:432 , HOH B:632 , HOH B:657 , HOH B:700 , HOH B:753 , HOH B:754	BINDING SITE FOR RESIDUE IXN B 800
03	AC3	SOFTWARE	GLU A:327 , ASN A:330 , HOH A:661 , HOH A:662 , HOH A:772 , GLN B:279	BINDING SITE FOR RESIDUE CA A 543
04	AC4	SOFTWARE	GLN A:53 , GLU A:58 , HOH A:663 , HOH A:664 , HOH A:665 , ASP B:171	BINDING SITE FOR RESIDUE CA A 544
05	AC5	SOFTWARE	GLN B:305 , LEU B:307 , ASN B:330 , HOH B:550 , HOH B:551 , HOH B:552 , HOH B:553	BINDING SITE FOR RESIDUE CA B 543
06	AC6	SOFTWARE	GLN A:305 , LEU A:307 , ASN A:330 , HOH A:659 , HOH A:660 , ASP B:302	BINDING SITE FOR RESIDUE CA A 545
07	AC7	SOFTWARE	GLN B:53 , GLU B:58 , HOH B:728 , HOH B:729 , HOH B:730 , HOH B:788	BINDING SITE FOR RESIDUE CA B 544
08	AC8	SOFTWARE	GLY B:74 , HOH B:694 , HOH B:695 , HOH B:696 , HOH B:767 , HOH B:771 , HOH B:789	BINDING SITE FOR RESIDUE CA B 545
09	AC9	SOFTWARE	GLY A:226 , LEU A:227 , THR A:231 , ASN A:281 , MET A:282 , HOH A:794	BINDING SITE FOR RESIDUE MPD A 546
10	BC1	SOFTWARE	THR B:231 , ASN B:281 , HOH B:776	BINDING SITE FOR RESIDUE MRD B 546

(no "SS Bond" information available for 3O83)

Asymmetric Unit

No.	Residues
1	Ser A:247	-	Pro A:248
2	Ser B:247	-	Pro B:248

(no "SAP(SNP)/Variant" information available for 3O83)

(no "PROSITE Motif" information available for 3O83)

(no "Exon" information available for 3O83)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d3o83a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh........hhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhh..eeeee..hhhhh.hhhhhhhhhh.....eeeee......eehhhhhhh...............eeeeee.......eeeeehhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh..eeeehhhhhhhhhhhhh.hhhhhh...eeeee....hhhhhhhhhhhhh.eeeeeee.....eee.....hhhhhhhh..ee.....eeeee............eeeeee..........hhhhhhhhh.....eeeeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o83 A   3 KQLIEFVRWSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIK 437
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      |204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434   
                                                                                                                                                                                                                              199|                                                                                                                                                                                                                                           
                                                                                                                                                                                                                               202

Chain B from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d3o83b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh........hhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhh..eeeee..hhhhh.hhhhhhhhhh.....eeeee......eehhhhhhh...............eeeeee.........eeeeehhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh.eeeeeee.....eee.....hhhhhhhh..ee.....eeeee............eeeeee..........hhhhhhhhh.....eeeeeeeee.....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o83 B   3 KQLIEFVRWSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 438
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Acetyl-CoA synthetase-like (64)

Superfamily: Acetyl-CoA synthetase-like (64)

Family: automated matches (26)

Protein domain: automated matches (26)

Acinetobacter baumannii [TaxId: 557601] (5)

1a	d3o83a_	A:
1b	d3o83b_	B:

(no "CATH Domain" information available for 3O83)

(no "Pfam Domain" information available for 3O83)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3O83)

Asymmetric Unit
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	Cis Peptide Bonds
		Ser A:247 - Pro A:248	[ RasMol ]
		Ser B:247 - Pro B:248	[ RasMol ]

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	3o83
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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