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(-) Description

Title :  CRYSTAL STRUCTURE OF CPE2226 PROTEIN FROM CLOSTRIDIUM PERFRINGENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CPR195
 
Authors :  S. Vorobiev, M. Su, J. Seetharaman, P. Patel, R. Xiao, C. Ciccosanti, H. J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt Northeast Structural Genomics Consortium (Nesg)
Date :  29 Jul 10  (Deposition) - 11 Aug 10  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Structural Genomics, Protein Structure Initiative, Nesg, Cpr195, Psi- Biology, Northeast Structural Genomics Consortium, Unknown, Putative Fmn-Binding Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, M. Su, J. Seetharaman, P. Patel, R. Xiao, C. Ciccosanti, H. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Cpe2226 Protein From Clostridium Perfringens.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN CPE2226
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CPE2226
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Organism Taxid: 1502

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric Unit (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3O6U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O6U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O6U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O6U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O6U)

(-) Exons   (0, 0)

(no "Exon" information available for 3O6U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with Q8XI95_CLOPE | Q8XI95 from UniProtKB/TrEMBL  Length:147

    Alignment length:122
                                                                                                                                                 147  
                                    37        47        57        67        77        87        97       107       117       127       137       147  
         Q8XI95_CLOPE    28 KLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh....eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6u A  28 mLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAmKREDKDYNEKmTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVDLE 149
                            |       37        47        57        67      | 77       |87        97       107       117       127       137       147  
                            |                                            74-MSE     85-MSE                                                            
                           28-MSE                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q8XI95_CLOPE | Q8XI95 from UniProtKB/TrEMBL  Length:147

    Alignment length:122
                                                                                                                                                 147  
                                    37        47        57        67        77        87        97       107       117       127       137       147  
         Q8XI95_CLOPE    28 KLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh....eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6u B  28 mLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAmKREDKDYNEKmTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVDLE 149
                            |       37        47        57        67      | 77       |87        97       107       117       127       137       147  
                           28-MSE                                        74-MSE     85-MSE                                                            


Chain C from PDB  Type:PROTEIN  Length:120
 aligned with Q8XI95_CLOPE | Q8XI95 from UniProtKB/TrEMBL  Length:147

    Alignment length:120
                                    37        47        57        67        77        87        97       107       117       127       137       147
         Q8XI95_CLOPE    28 KLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD 147
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeeee..eeeeeeeeeee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3o6u C  28 mLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAmKREDKDYNEKmTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD 147
                            |       37        47        57        67      | 77       |87        97       107       117       127       137       147
                           28-MSE                                        74-MSE     85-MSE                                                          


Chain D from PDB  Type:PROTEIN  Length:121
 aligned with Q8XI95_CLOPE | Q8XI95 from UniProtKB/TrEMBL  Length:147

    Alignment length:121
                                                                                                                                                 147 
                                    37        47        57        67        77        87        97       107       117       127       137       147 
         Q8XI95_CLOPE    28 KLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6u D  28 mLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAmKREDKDYNEKmTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVDL 148
                            |       37        47        57        67      | 77       |87        97       107       117       127       137       147 
                           28-MSE                                        74-MSE     85-MSE                                                           


Chain E from PDB  Type:PROTEIN  Length:122
 aligned with Q8XI95_CLOPE | Q8XI95 from UniProtKB/TrEMBL  Length:147

    Alignment length:122
                                                                                                                                                 147  
                                    37        47        57        67        77        87        97       107       117       127       137       147  
         Q8XI95_CLOPE    28 KLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------FMN_bind-3o6uE01 E:45-136                                                                   ------------- Pfam domains (1)
           Pfam domains (2) -----------------FMN_bind-3o6uE02 E:45-136                                                                   ------------- Pfam domains (2)
           Pfam domains (3) -----------------FMN_bind-3o6uE03 E:45-136                                                                   ------------- Pfam domains (3)
           Pfam domains (4) -----------------FMN_bind-3o6uE04 E:45-136                                                                   ------------- Pfam domains (4)
           Pfam domains (5) -----------------FMN_bind-3o6uE05 E:45-136                                                                   ------------- Pfam domains (5)
         Sec.struct. author ....eeeeeee.......eeeeeeeeee..eeeeeeeeeee.........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh....eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6u E  28 mLKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAmKREDKDYNEKmTGVSGIGPAEYEPQLEKALIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVDLE 149
                            |       37        47        57        67      | 77       |87        97       107       117       127       137       147  
                           28-MSE                                        74-MSE     85-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O6U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O6U)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: FMN_bind] (2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q8XI95_CLOPE | Q8XI95)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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