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(-) Description

Title :  CRYSTAL STRUCTURE OF CAD DOMAIN OF THE PLASMODIUM VIVAX CDPK, PVX_11610
 
Authors :  A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Weadge, A. Bochkarev, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, R. Hui, M. Aman Structural Genomics Consortium (Sgc)
Date :  27 Jul 10  (Deposition) - 25 Aug 10  (Release) - 25 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Ef-Hand, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Weadge, A. Bochkarev, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, R. Hui, M. Aman
Crystal Structure Of Cad Domain Of The Plasmodium Vivax Cdpk, Pvx_11610
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALCIUM-DEPENDENT PROTEIN KINASE 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15MLH
    Expression System Strain: PET15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 425-602
    Gene: PVX_119610
    Organism Scientific: PLASMODIUM VIVAX
    Organism Taxid: 5855

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:135 , ASP A:137 , ASP A:139 , GLU A:141 , GLU A:146 , HOH A:201BINDING SITE FOR RESIDUE CA A 197
2AC2SOFTWAREASP A:176 , ASN A:178 , ASP A:180 , LYS A:182 , GLU A:187 , HOH A:202BINDING SITE FOR RESIDUE CA A 198
3AC3SOFTWARETYR A:128 , PHE A:131 , ASP A:135 , ASN A:138 , GLY A:140 , HOH A:241BINDING SITE FOR RESIDUE GOL A 199
4AC4SOFTWAREHIS A:149 , ASN A:153 , ILE A:160BINDING SITE FOR RESIDUE PO4 A 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O4Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O4Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O4Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O4Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3O4Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with A5KBB4_PLAVS | A5KBB4 from UniProtKB/TrEMBL  Length:602

    Alignment length:231
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600 
         A5KBB4_PLAVS   371 KFTFKGKEWTHVTEEARDLIKRCLTMDPQKRATASEALRHPWFKKKPSTFTLDFKIDIHVLENFKNYALMLRFQKLAMTIIAQQSNDYDVQKLKAAFLHLDEEGKGNITKLQLRKGLERSGLMLPPNFDLLLDQIDSDGSGNIDYTEFLAAAIDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVKKMIREVDKNGDGKIDFYEFSEMMKLT 601
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------                                                -----------------------------------------------   --------------------------------   ----------------------EF_hand_4-3o4yA01 A:126-168                --------------------------- Pfam domains (1)
           Pfam domains (2) ------                                                -----------------------------------------------   --------------------------------   ---------------EF_hand_5-3o4yA02 A:119-192                                               --- Pfam domains (2)
           Pfam domains (3) ------                                                -----------------------------------------------   --------------------------------   ---------------EF_hand_5-3o4yA03 A:119-192                                               --- Pfam domains (3)
         Sec.struct. author hhhhhh------------------------------------------------hh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh---..eeehhhhhhhhhhh......hhhhhhhhhh---..eeehhhhhhhh.hhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh-----..hhhhhhhhhhhhhhh.......eehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o4y A  13 NLYFQG------------------------------------------------KIDIHVLENFKNYALMLRFQKLAMTIIAQQSNDYDVQKLKAAFLHLD---KGNITKLQLRKGLERSGLMLPPNFDLLLDQID---SGNIDYTEFLAAAIDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFN-----NITERDVNQVKKMIREVDKNGDGKIDFYEFSEMMKLT 195
                                 |   -         -         -         -         -    |   24        34        44        54        64|   |   74        84        94     | 104       114       124       134       144        |-    |  164       174       184       194 
                                18                                               19                                            65  69                            100 104                                              153   159
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O4Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O4Y)

(-) Pfam Domains  (2, 3)

Asymmetric Unit
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (A5KBB4_PLAVS | A5KBB4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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