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(-) Description

Title :  CRYSTAL STRUCTURE OF A SUPERANTIGEN-LIKE PROTEIN (SAV0433) FROM STAPHYLOCOCCUS AUREUS MU50 AT 2.05 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  20 Jul 10  (Deposition) - 25 Aug 10  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Superantigen-Like Protein (Sav0433) From Staphylococcus Aureus Mu50 At 2. 05 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUPERANTIGEN-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 31-227
    Gene: SET15, SAV0433
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50
    Organism Taxid: 158878
    Strain: MU50 / ATCC 700699
    Synonym: EXOTOXIN 15

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:216 , ASN A:219BINDING SITE FOR RESIDUE CL A 1
2AC2SOFTWARETYR A:198 , THR A:199 , ARG A:210 , HOH A:230 , HOH A:307BINDING SITE FOR RESIDUE CL A 2
3AC3SOFTWAREPRO A:208 , HIS A:209BINDING SITE FOR RESIDUE EDO A 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O13)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O13)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O13)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O13)

(-) Exons   (0, 0)

(no "Exon" information available for 3O13)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:187
 aligned with A0A0H3JXK4_S | A0A0H3JXK4 from UniProtKB/TrEMBL  Length:227

    Alignment length:194
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
         A0A0H3JXK4_S    34 EVRSQATQDLSEYYKGRGFELTNVTGYKYGNKVTFIDNSQQIDVTLTGNEKLTVKDDDEVSNVDVFVVREGSDKSAITTSIGGITKTNGTQHKDTVQNVNLSVSKSTGQHTTSVTSEYYSIYKEEISLKELDFKLRKHLIDKHDLYKTEPKDSKIRITMKNGGYYTFELNKKLQPHRMGDTIDSRNIEKIEVNL 227
               SCOP domains d3o13a1 A:34-124 automated matches                                                         d3o13a2 A:125-2     27 automated matches                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..eeeeeeeeeeee..eeeeee..eeeeee.............eeeeeeeeee....--...eeee..eee..........eeeeeeeee.-----.eeeeeeeee...eeehhhhhhhhhhhhhhhh..........eeeeee....eeeee.....hhhhh..eee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o13 A  34 EVRSQATQDLSEYYKGRGFELTNVTGYKYGNKVTFIDNSQQIDVTLTGNEKLTVKDDDEVSNVDVFVVREGS--SAITTSIGGITKTNGTQHKDTVQNVNLSVSKS-----TSVTSEYYSIYKEEISLKELDFKLRKHLIDKHDLYKTEPKDSKIRITmKNGGYYTFELNKKLQPHRmGDTIDSRNIEKIEVNL 227
                                    43        53        63        73        83        93       103 |  |  113       123       133     |   - |     153       163       173       183       193       203       213       223    
                                                                                                 105  |                            139   145                                            192-MSE            211-MSE            
                                                                                                    108
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O13)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3O13)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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