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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A FUNCTIONALLY UNKNOWN PROTEIN FROM SACCHAROMYCES CEREVISIAE.
 
Authors :  R. Zhang, K. Tan, X. Xu, H. Cui, S. Chin, A. Savchenko, A. Edwards, A. Joac Midwest Center For Structural Genomics (Mcsg)
Date :  20 Jul 10  (Deposition) - 15 Sep 10  (Release) - 15 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, K. Tan, X. Xu, H. Cui, S. Chin, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of A Functionally Unknown Protein Fro Saccharomyces Cerevisiae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN YJL217W
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: HRC198, J0226
    Organism Common: BREWER'S YEAST,LAGER BEER YEAST,YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:67BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWARETHR A:13 , TRP A:14 , HOH A:265 , HOH A:315 , HOH A:348BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREARG A:48 , ASP A:49 , SER A:50BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREARG A:48 , HOH A:226BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARELYS A:92 , GLY A:94 , ILE A:95 , GLU A:96 , SER A:105 , EDO A:206BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWAREASP A:37 , TRP A:39 , GLN A:78 , LYS A:92 , GLU A:96 , TRP A:115 , EDO A:205 , EDO A:207BINDING SITE FOR RESIDUE EDO A 206
7AC7SOFTWAREASP A:37 , TRP A:39 , TYR A:44 , EDO A:206BINDING SITE FOR RESIDUE EDO A 207
8AC8SOFTWARELEU A:104 , SER A:106 , SER A:116 , THR A:117 , VAL A:152BINDING SITE FOR RESIDUE EDO A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O12)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O12)

(-) Exons   (0, 0)

(no "Exon" information available for 3O12)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
 aligned with REE1_YEAST | P40893 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:185
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186     
           REE1_YEAST     7 TELSQGTWLNKPKSVFQEAGKVTLETDEKTDFWRETFYGFTRDSGHFLGVETGSAFTAQVRVQGSYESLYDQAGIMVRIDDGHWLKAGIEISDGHAMLSSVLTNGKSDWSTAVYGGNARDFWLRVTVEKGVLRIQVSSDKKTWPLVRLAPFPTSDHYLVGPMACTPERGGLKVTFSEWSLTAPLG 191
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------DUF1349-3o12A01 A:13-191                                                                                                                                                            Pfam domains
         Sec.struct. author .hhhhheee....eeeee..eeeee......eee......eee..eeeeee....eeeeeeeee.......eeeeeeeee..eeeeeeeeee..eeeeeeeeee..eeeeeee.......eeeeeeee..eeeeeee.......eeeeee.......eeeeeee.......eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o12 A   7 TELSQGTWLNKPKSVFQEAGKVTLETDEKTDFWRETFYGFTRDSGHFLGVETGSAFTAQVRVQGSYESLYDQAGImVRIDDGHWLKAGIEISDGHAmLSSVLTNGKSDWSTAVYGGNARDFWLRVTVEKGVLRIQVSSDKKTWPLVRLAPFPTSDHYLVGPmACTPERGGLKVTFSEWSLTAPLG 191
                                    16        26        36        46        56        66        76     |  86        96      |106       116       126       136       146       156       166 |     176       186     
                                                                                                      82-MSE              103-MSE                                                          168-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O12)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1349] (1)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (REE1_YEAST | P40893)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3o12
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 Related Entries

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