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(-) Description

Title :  CRYSTAL STRUCTURE OF A PFAM DUF1425 FAMILY MEMBER (SHEW_1734) FROM SHEWANELLA SP. PV-4 AT 1.81 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  19 Jul 10  (Deposition) - 04 Aug 10  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pfam Duf1425 Family Member, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Pfam Duf1425 Family Member (Shew_1734) From Shewanella Sp. Pv-4 At 1. 81 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SHEW_1734
    Organism Scientific: SHEWANELLA LOIHICA
    Organism Taxid: 323850
    Strain: ATCC BAA-1088 / PV-4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:33BINDING SITE FOR RESIDUE EDO A 132
2AC2SOFTWAREGLN B:71 , ARG B:72 , ASN B:83 , GLU B:125 , HOH B:154BINDING SITE FOR RESIDUE EDO B 130
3AC3SOFTWAREPHE B:39 , ASP B:81 , THR B:115 , SER B:128 , HOH B:149 , HOH B:184BINDING SITE FOR RESIDUE EDO B 131

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O0L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O0L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O0L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O0L)

(-) Exons   (0, 0)

(no "Exon" information available for 3O0L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with A3QDQ3_SHELP | A3QDQ3 from UniProtKB/TrEMBL  Length:129

    Alignment length:109
                                    29        39        49        59        69        79        89        99       109       119         
         A3QDQ3_SHELP    20 HTGGIMISSTGEVRVDNGSFHSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALSPNATAVRCELYVREAIS 128
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeee..eeeeeeeeeeeee.hhh.eeeeeeeee.....eeeeeeeeee..............eeeee....eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3o0l A  20 HTGGImISSTGEVRVDNGSFHSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQmQVTALSPNATAVRCELYVREAIS 128
                                 |  29        39        49        59        69        79        89        99     | 109       119         
                                 |                                                                             105-MSE                   
                                25-MSE                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:108
 aligned with A3QDQ3_SHELP | A3QDQ3 from UniProtKB/TrEMBL  Length:129

    Alignment length:108
                                    31        41        51        61        71        81        91       101       111       121        
         A3QDQ3_SHELP    22 GGIMISSTGEVRVDNGSFHSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALSPNATAVRCELYVREAISN 129
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------DUF1425-3o0lB01 B:32-125                                                                      ---- Pfam domains (1)
           Pfam domains (2) ----------DUF1425-3o0lB02 B:32-125                                                                      ---- Pfam domains (2)
         Sec.struct. author .eeeee...eeeeee..eeeeeee...eeeee..eeeeeeeeee.....eeeeeeeeee.....ee.......eeeee....eeeeeee.......eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3o0l B  22 GGImISSTGEVRVDNGSFHSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQmQVTALSPNATAVRCELYVREAISN 129
                               |    31        41        51        61        71        81        91       101   |   111       121        
                              25-MSE                                                                         105-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O0L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O0L)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1425] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3O0L)

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