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(-) Description

Title :  CRYSTAL STRUCTURE OF ALDO/KETO REDUCTASE FROM BRUCELLA MELITENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  19 Jul 10  (Deposition) - 11 Aug 10  (Release) - 11 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Ssgcid, Als Collaborative Crystallography, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ssgcid, J. Abendroth, T. E. Edwards, B. Staker
Crystal Structure Of Aldo/Keto Reductase From Brucella Melitensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALDO/KETO REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 19-279
    Gene: 3827820, BAB2_0177
    Organism Scientific: BRUCELLA MELITENSIS BIOVAR
    Organism Taxid: 359391
    Strain: ABORTUS 2308

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2GOL4Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:159 , PHE A:160 , GLN A:189 , HOH A:289 , HOH A:331 , MET D:130BINDING SITE FOR RESIDUE EDO A 301
2AC2SOFTWAREASN B:159 , PHE B:160 , GLN B:189 , HOH B:297 , HOH B:353 , HOH B:359 , MET C:130BINDING SITE FOR RESIDUE EDO B 301
3AC3SOFTWAREHOH B:352 , ASN C:159 , PHE C:160 , GLN C:189 , HOH C:386BINDING SITE FOR RESIDUE EDO C 301
4AC4SOFTWAREASN D:159 , PHE D:160 , GLN D:189 , HOH D:290 , HOH D:299 , HOH D:349BINDING SITE FOR RESIDUE EDO D 301
5AC5SOFTWARETRP A:41 , TYR A:69 , HIS A:127 , ASN A:159 , HOH A:281 , HOH A:291 , HOH A:671 , HOH D:287BINDING SITE FOR RESIDUE GOL A 300
6AC6SOFTWARETYR B:69 , HIS B:127 , ASN B:159 , TRP B:206 , HOH B:291 , HOH B:310 , HOH B:536 , HOH C:280BINDING SITE FOR RESIDUE GOL B 300
7AC7SOFTWAREHOH B:291 , TYR C:69 , HIS C:127 , ASN C:159 , TRP C:206 , HOH C:280 , HOH C:306BINDING SITE FOR RESIDUE GOL C 300
8AC8SOFTWAREHOH A:281 , HOH A:671 , TRP D:41 , TYR D:69 , HIS D:127 , ASN D:159 , TRP D:206 , HOH D:287 , HOH D:326BINDING SITE FOR RESIDUE GOL D 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O0K)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Met A:130 -Pro A:131
2Met B:130 -Pro B:131
3Met C:130 -Pro C:131
4Met D:130 -Pro D:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O0K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O0K)

(-) Exons   (0, 0)

(no "Exon" information available for 3O0K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with Q2YII2_BRUA2 | Q2YII2 from UniProtKB/TrEMBL  Length:294

    Alignment length:263
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276   
         Q2YII2_BRUA2    17 GYIMTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
               SCOP domains d3o0ka_ A: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh....eeeee......hhhhhhhhhhh..eeeee......-...hhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.....hhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0k A  17 SMIMTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQG-LLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206     | 216       226       236       246       256       266       276   
                                                                                                                                                                                                                             212 |                                                                 
                                                                                                                                                                                                                               214                                                                 


Chain B from PDB  Type:PROTEIN  Length:256
 aligned with Q2YII2_BRUA2 | Q2YII2 from UniProtKB/TrEMBL  Length:294

    Alignment length:259
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270         
         Q2YII2_BRUA2    21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
               SCOP domains d3o0kb_ B: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh....eeeee......hhhhhhhhhhh..eeeee....---...hhhhhhhhhhhh.hhhhhhhhhhhhh..ee.....hhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0k B  21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLG---LLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   |   220       230       240       250       260       270         
                                                                                                                                                                                                                       210 214                                                                 


Chain C from PDB  Type:PROTEIN  Length:256
 aligned with Q2YII2_BRUA2 | Q2YII2 from UniProtKB/TrEMBL  Length:294

    Alignment length:259
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270         
         Q2YII2_BRUA2    21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
               SCOP domains d3o0kc_ C: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh..hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh....eeeee......hhhhhhhhhhh..eeeee....---...hhhhhhhhhhhh.hhhhhhhhhhhhhh.eee....hhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0k C  21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLG---LLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   |   220       230       240       250       260       270         
                                                                                                                                                                                                                       210 214                                                                 


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with Q2YII2_BRUA2 | Q2YII2 from UniProtKB/TrEMBL  Length:294

    Alignment length:259
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270         
         Q2YII2_BRUA2    21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
               SCOP domains d3o0kd_ D: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------Aldo_ket_red-3o0kD01 D:35-279                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) --------------Aldo_ket_red-3o0kD02 D:35-279                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) --------------Aldo_ket_red-3o0kD03 D:35-279                                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) --------------Aldo_ket_red-3o0kD04 D:35-279                                                                                                                                                                                                                         Pfam domains (4)
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh..hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh....eeeee......hhhhhhhhhhh..eeeee....--....hhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.....hhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0k D  21 TVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLG--KLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 279
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  |    220       230       240       250       260       270         
                                                                                                                                                                                                                       210  |                                                                  
                                                                                                                                                                                                                          213
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O0K)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Aldo_ket_red] (94)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q2YII2_BRUA2 | Q2YII2)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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