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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BETA-KETO-ACYL CARRIER PROTEIN SYNTHASE II (LMO2201) FROM LISTERIA MONOCYTOGENES
 
Authors :  S. M. Anderson, Z. Wawrzak, O. Onopriyenko, W. F. Anderson, A. Savchenk For Structural Genomics Of Infectious Diseases (Csgid)
Date :  19 Jul 10  (Deposition) - 04 Aug 10  (Release) - 04 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Csgid, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, 3-Layer(Aba) Sandwich, Acyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Anderson, Z. Wawrzak, O. Onopriyenko, W. F. Anderson, A. Savchenko
Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-KETO-ACYL CARRIER PROTEIN SYNTHASE II
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Gene: LMO2201
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E
    Synonym: LMO2201 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric Unit (1, 13)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 13)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 26)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3O04)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O04)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O04)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O04)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O04)

(-) Exons   (0, 0)

(no "Exon" information available for 3O04)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:413
 aligned with Q8Y574_LISMO | Q8Y574 from UniProtKB/TrEMBL  Length:413

    Alignment length:413
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410   
         Q8Y574_LISMO     1 MDKRRVVVTGVGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVFKRIED 413
               SCOP domains d3o04a1 A:1-251 automated matches                                                                                                                                                                                                                          d3o04a2 A:252-413 automated matches                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --ketoacyl-synt-3o04A02 A:3-246                                                                                                                                                                                                                       -------Ketoacyl-synt_C-3o04A01 A:254-369                                                                                   -------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhh....eee....hhhhh...eee.....hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeee....hhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh...........................eeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhh...eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o04 A   1 mDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKmTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKmDRFTHYAIASAEmAVQDSGLVIDDSNANRVGVWIGSGIGGmETFETQYEIFLNRGHRRVSPFFVPmmIPDmGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAmITGGAEAPITKmSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAmKmAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSmTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVFKRIED 413
                            |       10        20        30       |40        50        60        70|       80   |    90       100       110 |     120       130      |140 |     150       160       170       180     | 190       200       210       220       230       240       250       260       270       280  | |  290       300       310       320       330      |340       350       360       370       380       390       400       410   
                            |                                   38-MSE                           71-MSE       84-MSE                     112-MSE                  137-MSE|                                         186-MSE     198-MSE                                                                              283-MSE                                               337-MSE                                                                        
                            1-MSE                                                                                                                                  138-MSE                                                                                                                                            285-MSE                                                                                                                            
                                                                                                                                                                       142-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O04)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: Thiolase (72)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8Y574_LISMO | Q8Y574)
molecular function
    GO:0033817    beta-ketoacyl-acyl-carrier-protein synthase II activity    Catalysis of the reaction: (Z)-hexadec-11-enoyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = (Z)-3-oxooctadec-13-enoyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein].
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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