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(-) Description

Title :  CRYSTAL STRUCTURE OF A BETAKETOACYL-[ACP] REDUCTASE (FABG) FROM BACTEROIDES THETAIOTAOMICRON
 
Authors :  L. Satyanarayana, S. K. Burley, S. Swaminathan, New York Sgx Resear For Structural Genomics (Nysgxrc)
Date :  15 Jul 10  (Deposition) - 15 Sep 10  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Fatty Acid Synthesis, 3-Oxoacyl-[Acp] Reductase, Nadp+ Binding, Rossmann Fold, Psi-Ii, Nysgxrc, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Oxidoreductase, Oxidation Reduction, Mitochondria (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Satyanarayana, S. K. Burley, S. Swaminathan
Crystal Structure Of A Betaketoacyl-[Acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3 (BC)
    Expression System Strain: BL21 (DE3) CODON + RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BT_2380
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 31)

Asymmetric/Biological Unit (1, 31)
No.NameCountTypeFull Name
1MSE31Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3NYW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NYW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NYW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NYW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NYW)

(-) Exons   (0, 0)

(no "Exon" information available for 3NYW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with Q8A562_BACTN | Q8A562 from UniProtKB/TrEMBL  Length:240

    Alignment length:239
                                                                                                                                                                                                                                                                       240 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       | 
         Q8A562_BACTN     3 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSII-   -
               SCOP domains d3nywa_ A: automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..-------...hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhh....hhhhh.hhhhhhhhhhhhhh....ee..eeeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nyw A   3 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEImRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAmFmDGSLSEPVDNFRKImEINVIAQYGILKTVTEImKVQKNGYIFNVAS-------ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDmAKKAGTPFKDEEmIQPDDLLNTIRCLLNLSENVCIKDIVFEmKKSIIE 241
                                    12        22        32        42       |52        62        72        82        92  | |  102       112       122       132       142|      152       162       172       182       192|      202   |   212       222       232  |      
                                                                          50-MSE                                       95-MSE          112-MSE           130-MSE      143     151                                       193-MSE      206-MSE                      235-MSE  
                                                                                                                         97-MSE                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q8A562_BACTN | Q8A562 from UniProtKB/TrEMBL  Length:240

    Alignment length:237
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       
         Q8A562_BACTN     4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSII 240
               SCOP domains d3nywb_ B: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhh.eeeeee......-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.--------...hhhhhhhhhhhhhhhhhhhhhh...eeeeeee...........----.......hhhhhhhhhhhhhhh...ee..eee.ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nyw B   4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEImRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAmFm-----EPVDNFRKImEINVIAQYGILKTVTEImKVQKNGYIFNVA--------ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDmAKK----FKDEEmIQPDDLLNTIRCLLNLSENVCIKDIVFEmKKSII 240
                                    13        23        33        43      | 53        63        73        83        93 | |   103       113       123      |133        |-       153       163       173       183       193  |    203  |    213       223       233 |     
                                                                         50-MSE                                       95-MSE 103      112-MSE           130-MSE     142      151                                       193-MSE 201    |                          235-MSE 
                                                                                                                        97-MSE                                                                                            196       206-MSE                              


Chain C from PDB  Type:PROTEIN  Length:228
 aligned with Q8A562_BACTN | Q8A562 from UniProtKB/TrEMBL  Length:240

    Alignment length:238
                                                                                                                                                                                                                                                                      240 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      | 
         Q8A562_BACTN     4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSII-   -
               SCOP domains d3nywc_ C: automated matches                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhhh.eeeeee......----.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..------.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhh..........hhhhhhhhhhhhhhh...ee..eeeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nyw C   4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEImRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAmFm----SEPVDNFRKImEINVIAQYGILKTVTEImKVQKNGYIFNVAS------FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDmAKKAGTPFKDEEmIQPDDLLNTIRCLLNLSENVCIKDIVFEmKKSIIE 241
                                    13        23        33        43      | 53        63        73        83        93 | |   103       113       123      |133       143      |153       163       173       183       193       203  |    213       223       233 |      
                                                                         50-MSE                                       95-MSE102       112-MSE           130-MSE      143    150                                        193-MSE      206-MSE                      235-MSE  
                                                                                                                        97-MSE                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:213
 aligned with Q8A562_BACTN | Q8A562 from UniProtKB/TrEMBL  Length:240

    Alignment length:237
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       
         Q8A562_BACTN     4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSII 240
               SCOP domains d3nywd_ D: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --adh_short-3nywD01 D:6-175                                                                                                                                                 ---------------            -------------------------------------- Pfam domains (1)
           Pfam domains (2) --adh_short-3nywD02 D:6-175                                                                                                                                                 ---------------            -------------------------------------- Pfam domains (2)
           Pfam domains (3) --adh_short-3nywD03 D:6-175                                                                                                                                                 ---------------            -------------------------------------- Pfam domains (3)
           Pfam domains (4) --adh_short-3nywD04 D:6-175                                                                                                                                                 ---------------            -------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhhhh.eeeeee......-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...-------..hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....------------.....hhhhhhhhhhhhhhh...ee..eeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nyw D   4 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEImRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAmFm-----EPVDNFRKImEINVIAQYGILKTVTEImKVQKNGYIFNVASR-------DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVN------------DEEmIQPDDLLNTIRCLLNLSENVCIKDIVFEmKKSII 240
                                    13        23        33        43      | 53        63        73        83        93 | |   103       113       123      |133       143|      153       163       173       183      |  -       203  |    213       223       233 |     
                                                                         50-MSE                                       95-MSE 103      112-MSE           130-MSE       144     152                                   190          203  |                          235-MSE 
                                                                                                                        97-MSE                                                                                                      206-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NYW)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NYW)

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