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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A MICROCOMPARMENTS PROTEIN FROM DESULFITOBACTERIUM HAFNIENSE DCB
 
Authors :  Y. Fan, L. Volkart, M. Gu, S. Axen, W. B. Greenleaf, C. Kerfeld, A. Joachi Midwest Center For Structural Genomics (Mcsg)
Date :  09 Jul 10  (Deposition) - 22 Sep 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  A  (3x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Bmc Domain, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. B. Greenleaf, Y. Fan, S. Axen, L. Volkart, M. Gu, A. Joachimiak, C. Kerfeld
Structure Of A Pdut Homolog From A Novel Bacterial Microcompartment
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MICROCOMPARTMENTS PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: PPK1037
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DHAF_0360
    Organism Scientific: DESULFITOBACTERIUM HAFNIENSE
    Organism Taxid: 272564
    Strain: DCB

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 54)
No.NameCountTypeFull Name
1GOL18Ligand/IonGLYCEROL
2MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 27)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:60BINDING SITE FOR RESIDUE GOL A 182
2AC2SOFTWARELEU A:23 , LYS A:24 , ALA A:26 , GLN A:27BINDING SITE FOR RESIDUE GOL A 183
3AC3SOFTWARETYR A:41 , ARG A:126 , PHE A:136BINDING SITE FOR RESIDUE GOL A 184

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NWG)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Pro A:38 -Gly A:39
2Gly A:128 -Mse A:129
3Gly A:130 -Ile A:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NWG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NWG)

(-) Exons   (0, 0)

(no "Exon" information available for 3NWG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
 aligned with B8G1Q4_DESHD | B8G1Q4 from UniProtKB/TrEMBL  Length:181

    Alignment length:180
                             1                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
         B8G1Q4_DESHD     - -MESIGLVEVNSIARGIEAADAMLKAAQVDLLEAKPVCPGKYIVLICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASERGMLVDKVVIPSPHDHLKRC 179
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------BMC-3nwgA01 A:94-172                                                           ------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------BMC-3nwgA02 A:94-172                                                           ------- Pfam domains (2)
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.....eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhh.........eeeeeee.hhhhhhhhhhhhhhh...eeeeee........eeeeeeehhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwg A   0 AmESIGLVEVNSIARGIEAADAmLKAAQVDLLEAKPVCPGKYIVLICGDVAAVQSSVTAGKTmAAHSVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIGmGIGGKSFVTLTGDVASVESSVAAGVmLASERGmLVDKVVIPSPHDHLKRC 179
                             |       9        19  |     29        39        49        59  |     69        79        89        99       109       119       129       139       149     | 159  |    169       179
                             |                   22-MSE                                  62-MSE                                                            129-MSE                   155-MSE  |                 
                             1-MSE                                                                                                                                                          162-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NWG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NWG)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: BMC] (7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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