3NTE - JenaLib

Asymmetric Unit (40, 40)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:178	BINDING SITE FOR RESIDUE IOD A 222
02	AC2	SOFTWARE	IOD A:230 , FE A:243 , HOH A:260	BINDING SITE FOR RESIDUE IOD A 223
03	AC3	SOFTWARE	HOH A:302 , HOH B:281	BINDING SITE FOR RESIDUE IOD A 224
04	AC4	SOFTWARE	PRO A:1 , HOH A:341	BINDING SITE FOR RESIDUE IOD A 225
05	AC5	SOFTWARE	ARG A:173 , LYS A:182	BINDING SITE FOR RESIDUE IOD A 226
06	AC6	SOFTWARE	LYS A:158 , FE A:239	BINDING SITE FOR RESIDUE IOD A 227
07	AC7	SOFTWARE	FE A:241	BINDING SITE FOR RESIDUE IOD A 228
08	AC8	SOFTWARE	ASN A:74 , HOH A:332 , HOH A:333	BINDING SITE FOR RESIDUE IOD A 229
09	AC9	SOFTWARE	ILE A:129 , IOD A:223	BINDING SITE FOR RESIDUE IOD A 230
10	BC1	SOFTWARE	ILE A:37 , HOH A:321 , HOH A:336	BINDING SITE FOR RESIDUE IOD A 231
11	BC2	SOFTWARE	FE A:245 , FE A:247	BINDING SITE FOR RESIDUE IOD A 232
12	BC3	SOFTWARE	FE A:247 , HOH A:260	BINDING SITE FOR RESIDUE IOD A 233
13	BC4	SOFTWARE	VAL A:142 , HOH A:265 , HOH A:325	BINDING SITE FOR RESIDUE I3M A 234
14	BC5	SOFTWARE	HOH A:323	BINDING SITE FOR RESIDUE FE A 235
15	BC6	SOFTWARE	MET A:118 , PRO A:125 , GLY A:127 , GLU A:128 , HOH A:312	BINDING SITE FOR RESIDUE FE A 237
16	BC7	SOFTWARE	GLU A:35 , PRO B:34 , VAL B:142 , HOH B:262 , HOH B:281	BINDING SITE FOR RESIDUE FE A 238
17	BC8	SOFTWARE	IOD A:227	BINDING SITE FOR RESIDUE FE A 239
18	BC9	SOFTWARE	ASN A:53 , ASN A:57	BINDING SITE FOR RESIDUE FE A 240
19	CC1	SOFTWARE	IOD A:228 , HOH A:331	BINDING SITE FOR RESIDUE FE A 241
20	CC2	SOFTWARE	HOH A:278 , HOH B:261	BINDING SITE FOR RESIDUE FE A 242
21	CC3	SOFTWARE	IOD A:223 , HOH A:260	BINDING SITE FOR RESIDUE FE A 243
22	CC4	SOFTWARE	ILE A:15 , SER A:16 , THR A:19 , HOH A:341 , HOH A:342	BINDING SITE FOR RESIDUE FE A 244
23	CC5	SOFTWARE	IOD A:232	BINDING SITE FOR RESIDUE FE A 245
24	CC6	SOFTWARE	HIS A:87 , HOH A:376	BINDING SITE FOR RESIDUE FE A 246
25	CC7	SOFTWARE	IOD A:232 , IOD A:233	BINDING SITE FOR RESIDUE FE A 247
26	CC8	SOFTWARE	ILE B:6	BINDING SITE FOR RESIDUE IOD B 222
27	CC9	SOFTWARE	SER B:178	BINDING SITE FOR RESIDUE IOD B 223
28	DC1	SOFTWARE	PRO B:157 , LYS B:158 , GLU B:159 , HOH B:265	BINDING SITE FOR RESIDUE IOD B 224
29	DC2	SOFTWARE	HIS B:62	BINDING SITE FOR RESIDUE IOD B 226
30	DC3	SOFTWARE	PHE B:32 , HOH B:295	BINDING SITE FOR RESIDUE I3M B 227
31	DC4	SOFTWARE	ASN B:74 , HOH B:305	BINDING SITE FOR RESIDUE FE B 228
32	DC5	SOFTWARE	MET B:118 , PRO B:125 , GLY B:127 , GLU B:128 , HOH B:258	BINDING SITE FOR RESIDUE FE B 229
33	DC6	SOFTWARE	ARG B:162	BINDING SITE FOR RESIDUE FE B 230
34	DC7	SOFTWARE	HOH B:260	BINDING SITE FOR RESIDUE FE B 231
35	DC8	SOFTWARE	HOH A:250 , ARG B:173	BINDING SITE FOR RESIDUE FE B 233
36	DC9	SOFTWARE	ARG B:132 , HOH B:285	BINDING SITE FOR RESIDUE FE B 234
37	EC1	SOFTWARE	GLY B:46 , GLU B:128 , LYS B:131	BINDING SITE FOR RESIDUE FE B 235
38	EC2	SOFTWARE	ASP A:163 , HOH A:288 , GLY B:220 , HOH B:290	BINDING SITE FOR RESIDUE FE B 236
39	EC3	SOFTWARE	ILE B:124 , HOH B:247	BINDING SITE FOR RESIDUE FE B 237
40	EC4	SOFTWARE	ASN B:74	BINDING SITE FOR RESIDUE NA B 238

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:221
 aligned with Q77YG1_9HIV1 | Q77YG1 from UniProtKB/TrEMBL  Length:500

    Alignment length:221
                                   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352 
         Q77YG1_9HIV1   133 PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGV 353
               SCOP domains d3ntea1 A:1-147 automated matches                                                                                                                  d3ntea2 A:148-221 automated matches                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nte A   1 PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGV 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain B from PDB  Type:PROTEIN  Length:216
 aligned with Q77YG1_9HIV1 | Q77YG1 from UniProtKB/TrEMBL  Length:500

    Alignment length:221
                                   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352 
         Q77YG1_9HIV1   133 PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGV 353
               SCOP domains d3nteb1 B:1-147 automated matches                                                                                                                  d3nteb2 B:148-221 automated matches                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh......-----....hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nte B   1 PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGP-----MREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGV 221
                                    10        20        30        40        50        60        70        80        90     | 100       110       120       130       140       150       160       170       180       190       200       210       220 
                                                                                                                    90    96

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q77YG1_9HIV1 | Q77YG1)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006754	ATP biosynthetic process	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0060559	positive regulation of calcidiol 1-monooxygenase activity	Any process that increases the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is the catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O.
	GO:0060550	positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity	Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0046755	viral budding	A viral process by which enveloped viruses acquire a host-derived membrane enriched in viral proteins to form their external envelope. The process starts when nucleocapsids, assembled or in the process of being built, induce formation of a membrane curvature in the host plasma or organelle membrane and wrap up in the forming bud. The process ends when the bud is eventually pinched off by membrane scission to release the enveloped particle into the lumenal or extracellular space.
	GO:0039702	viral budding via host ESCRT complex	Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019076	viral release from host cell	The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019013	viral nucleocapsid	The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

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		Asn A:121 - Pro A:122	[ RasMol ]
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	3nte
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	Q77YG1_9HIV1 \| Q77YG1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 43)

Sites (40, 40)