3NQR - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   A PUTATIVE CBS DOMAIN-CONTAINING PROTEIN FROM SALMONELLA TYPHIMURIUM LT2

Authors :   E. V. Filippova, G. Minasov, O. Kiryukhina, L. Shuvalova, H. Cui, A. Joa F. W. Anderson, Midwest Center For Structural Genomics (Mcsg)

Date :   29 Jun 10 (Deposition) - 25 Aug 10 (Release) - 08 Sep 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x),D (1x)
Biol. Unit 2: B (1x),C (1x)

Keywords :   Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Cbs Domain, Efflux Protein Corc, Structure Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Filippova, G. Minasov, O. Kiryukhina, L. Shuvalova, H. Cui, A. Joachimiak, F. W. Anderson
A Putative Cbs Domain-Containing Protein From Salmonella Typhimurium Lt2.
To Be Published
PubMed: search

Molecule 1 - MAGNESIUM AND COBALT EFFLUX PROTEIN CORC
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	CBS DOMAIN RESIDUES 65-191
	Gene	:	CORC, STM0667
	Organism Scientific	:	SALMONELLA TYPHIMURIUM
	Organism Taxid	:	90371

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A (1x)			D (1x)
Biological Unit 2 (1x)	:		B (1x)	C (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 32)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	MSE	28	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:32 , ILE A:74 , GLN A:78 , MSE A:79 , ILE A:80 , HIS A:100 , SER A:101 , ARG A:102 , MSE A:165 , THR A:180 , GLU A:182 , ASP A:183 , HOH A:221	BINDING SITE FOR RESIDUE AMP A 1
2	AC2	SOFTWARE	HOH B:8 , HOH B:58 , ILE B:74 , GLN B:78 , ILE B:80 , HIS B:100 , SER B:101 , ARG B:102 , MSE B:165 , THR B:180 , GLU B:182 , ASP B:183 , HOH B:198 , HOH B:213	BINDING SITE FOR RESIDUE AMP B 2
3	AC3	SOFTWARE	HOH C:11 , ILE C:74 , GLN C:78 , ILE C:80 , ALA C:99 , HIS C:100 , SER C:101 , ARG C:102 , PRO C:104 , MSE C:165 , THR C:180 , ASP C:183 , HOH C:212	BINDING SITE FOR RESIDUE AMP C 3
4	AC4	SOFTWARE	HOH D:7 , HOH D:31 , ILE D:74 , GLN D:78 , ILE D:80 , HIS D:100 , SER D:101 , ARG D:102 , MSE D:165 , THR D:180 , ASP D:183 , HOH D:195	BINDING SITE FOR RESIDUE AMP D 4

(no "SS Bond" information available for 3NQR)

(no "Cis Peptide Bond" information available for 3NQR)

(no "SAP(SNP)/Variant" information available for 3NQR)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	CORC_SALTY	73-133 135-195	8	A:73-133 B:73-133 C:73-133 D:73-133 A:135-188 B:135-190 C:135-191 D:135-189

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	CORC_SALTY	73-133 135-195	4	A:73-133 - - D:73-133 A:135-188 - - D:135-189

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	CORC_SALTY	73-133 135-195	4	- B:73-133 C:73-133 - - B:135-190 C:135-191 -

(no "Exon" information available for 3NQR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:122
 aligned with CORC_SALTY | P0A2L3 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:122
                                    76        86        96       106       116       126       136       146       156       166       176       186  
           CORC_SALTY    67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhee.hhh..ee...hhhhhhhhhhhhh..eeeee......eeeeee.hhhhhhhh......hhhhhh....eee...hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------CBS  PDB: A:73-133 UniProt: 73-133                           -CBS  PDB: A:135-188 UniProt: 135-195                   PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqr A  67 QRVRDImIPRSQmITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILmAKDLLPFmRSDAEAFSmDKVLRTAVVVPESKRVDRmLKEFRSQRYHmAIVIDEFGGVSGLVTIEDILELI 188
                                  | 76  |     86        96       106       116 |     126       136       146       156       166       176       186  
                                 73-MSE |                                    118-MSE 126-MSE  135-MSE            154-MSE    165-MSE                   
                                       79-MSE

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with CORC_SALTY | P0A2L3 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:126
                                    74        84        94       104       114       124       134       144       154       164       174       184      
           CORC_SALTY    65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhee.hhh..ee...hhhhhhhhhhhhh..eeeee..--..eeeeee.hhhhhhhh...-..hhhhh.....eee...hhhhhhhhh......eeeee.....eeeeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------CBS  PDB: B:73-133 UniProt: 73-133                           -CBS  PDB: B:135-190 UniProt: 135-195                     PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nqr B  65 ADQRVRDImIPRSQmITLKRNQTLDECLDVIIESAHSRFPVISE--DHIEGILmAKDLLPFmRSDA-AFSmDKVLRTAVVVPESKRVDRmLKEFRSQRYHmAIVIDEFGGVSGLVTIEDILELIVG 190
                                    74    |   84        94       104   |  |114   |   124 |   | 134|      144       154       164|      174       184      
                                   73-MSE |                          108  |      |     126-MSE |  |                154-MSE    165-MSE                     
                                         79-MSE                         111      |           132  |                                                       
                                                                               118-MSE          135-MSE

Chain C from PDB  Type:PROTEIN  Length:126
 aligned with CORC_SALTY | P0A2L3 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:126
                                    75        85        95       105       115       125       135       145       155       165       175       185      
           CORC_SALTY    66 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhee.hhh..ee...hhhhhhhhhhhh...eeeee......eeeeee.hhhhhhhh......hhhhh.....eee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------CBS  PDB: C:73-133 UniProt: 73-133                           -CBS  PDB: C:135-191 UniProt: 135-195                      PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nqr C  66 DQRVRDImIPRSQmITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILmAKDLLPFmRSDAEAFSmDKVLRTAVVVPESKRVDRmLKEFRSQRYHmAIVIDEFGGVSGLVTIEDILELIVGE 191
                                   |75   |    85        95       105       115  |    125|      135       145       155       165       175       185      
                                  73-MSE |                                    118-MSE 126-MSE  135-MSE            154-MSE    165-MSE                      
                                        79-MSE

Chain D from PDB  Type:PROTEIN  Length:123
 aligned with CORC_SALTY | P0A2L3 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:123
                                    76        86        96       106       116       126       136       146       156       166       176       186   
           CORC_SALTY    67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------CBS-3nqrD01 D:135-189                                   Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------CBS-3nqrD02 D:135-189                                   Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------CBS-3nqrD03 D:135-189                                   Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------CBS-3nqrD04 D:135-189                                   Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------CBS-3nqrD05 D:135-189                                   Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------CBS-3nqrD06 D:135-189                                   Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------CBS-3nqrD07 D:135-189                                   Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------CBS-3nqrD08 D:135-189                                   Pfam domains (8)
         Sec.struct. author .hhhhh.ee.hhh..ee...hhhhhhhhhhhhh..eeeee......eeeeee.hhhhhhhh......hhhhh....eeee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------CBS  PDB: D:73-133 UniProt: 73-133                           -CBS  PDB: D:135-189 UniProt: 135-195                    PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqr D  67 QRVRDImIPRSQmITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILmAKDLLPFmRSDAEAFSmDKVLRTAVVVPESKRVDRmLKEFRSQRYHmAIVIDEFGGVSGLVTIEDILELIV 189
                                  | 76  |     86        96       106       116 |     126       136       146       156       166       176       186   
                                 73-MSE |                                    118-MSE 126-MSE  135-MSE            154-MSE    165-MSE                    
                                       79-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3NQR)

(no "CATH Domain" information available for 3NQR)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: CBS] (51)

Family: CBS (51)

Salmonella typhimurium (1)

1a	CBS-3nqrD01	D:135-189
1b	CBS-3nqrD02	D:135-189
1c	CBS-3nqrD03	D:135-189
1d	CBS-3nqrD04	D:135-189
1e	CBS-3nqrD05	D:135-189
1f	CBS-3nqrD06	D:135-189
1g	CBS-3nqrD07	D:135-189
1h	CBS-3nqrD08	D:135-189

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (CORC_SALTY | P0A2L3)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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	3nqr
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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 32)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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