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(-) Description

Title :  CRYSTAL STRUCTURE OF A SUSD SUPERFAMILY PROTEIN (BF1802) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Jun 10  (Deposition) - 13 Oct 10  (Release) - 13 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Susd Superfamily Protein (Bf1802) From Bacteroides Fragilis Nctc 9343 At 1. 90 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD SUPERFAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF1802
    Organism Scientific: BACTEROIDES FRAGILIS NCTC 9343
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343
    Synonym: POSSIBLE OUTER MEMBRANE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 32)

Asymmetric Unit (4, 32)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MSE22Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MSE11Mod. Amino AcidSELENOMETHIONINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (4, 14)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE11Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:61 , GLY A:110 , ASP A:111 , ARG A:115BINDING SITE FOR RESIDUE ACT A 1001
02AC2SOFTWAREALA A:82 , SER A:84 , TYR A:378 , EDO A:1005 , HOH A:1218 , HOH A:1874BINDING SITE FOR RESIDUE EDO A 1004
03AC3SOFTWARELYS A:345 , LEU A:377 , TYR A:378 , EDO A:1004 , HOH A:1963 , HOH A:2132BINDING SITE FOR RESIDUE EDO A 1005
04AC4SOFTWAREALA A:300 , THR A:301 , THR A:456 , HOH A:2077BINDING SITE FOR RESIDUE EDO A 1006
05AC5SOFTWAREHIS A:56 , LYS A:57 , TYR A:221 , GLU A:299 , HOH A:1381BINDING SITE FOR RESIDUE EDO A 1007
06AC6SOFTWAREGLU A:261 , LEU A:264 , ASN A:265 , HOH A:1835BINDING SITE FOR RESIDUE EDO A 1008
07AC7SOFTWAREILE A:386 , GLY A:387 , ARG A:395 , HOH A:1231 , HOH A:1538 , HOH A:1657 , HOH A:2218BINDING SITE FOR RESIDUE EDO A 1009
08AC8SOFTWARETYR B:41BINDING SITE FOR RESIDUE ACT B 1002
09AC9SOFTWAREHIS B:56 , LYS B:57 , TYR B:221 , GLU B:299 , HOH B:1536 , HOH B:1574BINDING SITE FOR RESIDUE EDO B 1003
10BC1SOFTWAREHOH A:2112 , SER B:84 , LYS B:345 , TYR B:378 , HOH B:1649 , HOH B:2113 , HOH B:2216BINDING SITE FOR RESIDUE PEG B 1010

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NQP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NQP)

(-) Exons   (0, 0)

(no "Exon" information available for 3NQP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:486
 aligned with Q5LEF0_BACFN | Q5LEF0 from UniProtKB/TrEMBL  Length:538

    Alignment length:498
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530        
         Q5LEF0_BACFN    41 YWKTEAQATAYIDGIHKHLRDAAWQHTITFGELRGGRFITGASSDGMGVSNGDIILQNFDETHTGVSKFGDLFGRITNLNLFIARVTDATYLSDEMKNFYLGEVYGLRAFYYFDLYRIYGGVPLRLTADVVEGVIDPNKLYMARSTPKEVMTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLNNYNLKMLDDFSQVFNAKNKANDEIIFAIRFLEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALDIQNTGNQTYEYNKAVYQNFDDADTRKEATFIASYNKDGKTGELSLYGTHVRKNIGYVNAQGARVYCGDYIFYRLPWVYLTLAEIANMEGDNAAVAKYINLVRKRAYGNAWDETLYAYPETADFTTNELAILHEKDKEFIQEGQRWWDLRRMTLTKGGTPLVFCKEGSLLGDAPILNKSTEAHKLLWPIEKTMLNKDPALEQTPGYK 538
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......------------......hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.......hhhhhhh........eeeee.........hhhhhh......hhhhh........................hhhhhhh.....hhhhhheeeeeee......eeeeeeee.....ee.....ee....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhh.......hhhhhhhhh............hhhhhh...hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nqp A  41 YWKTEAQATAYIDGIHKHLRDAAWQHTITFGELRGGRFITGASSDGmGVSNGDIILQNFDETHTGVSKFGDLFGRITNLNLFIARVTDATYLSDEmKNFYLGEVYGLRAFYYFDLYRIYGGVPLRLT------------LYmARSTPKEVmTQIKSDLNKSmEYFGNmNDFDPYKRGKKVYWSKAATECLmGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLNNYNLKmLDDFSQVFNAKNKANDEIIFAIRFLEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALDIQNTGNQTYEYNKAVYQNFDDADTRKEATFIASYNKDGKTGELSLYGTHVRKNIGYVNAQGARVYCGDYIFYRLPWVYLTLAEIANmEGDNAAVAKYINLVRKRAYGNAWDETLYAYPETADFTTNELAILHEKDKEFIQEGQRWWDLRRmTLTKGGTPLVFCKEGSLLGDAPILNKSTEAHKLLWPIEKTmLNKDPALEQTPGYK 538
                                    50        60        70        80      | 90       100       110       120       130     | 140       150       160      |  -       180 |     190|      200 |     210       220       230|      240       250       260       270|      280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480  |    490       500       510       520   |   530        
                                                                         87-MSE                                          136-MSE                        167          180 |      191-MSE    202-MSE |                    231-MSE                                 271-MSE                                                                                                                                             419-MSE                                                         483-MSE                                  524-MSE          
                                                                                                                                                                       182-MSE                   208-MSE                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:487
 aligned with Q5LEF0_BACFN | Q5LEF0 from UniProtKB/TrEMBL  Length:538

    Alignment length:498
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530        
         Q5LEF0_BACFN    41 YWKTEAQATAYIDGIHKHLRDAAWQHTITFGELRGGRFITGASSDGMGVSNGDIILQNFDETHTGVSKFGDLFGRITNLNLFIARVTDATYLSDEMKNFYLGEVYGLRAFYYFDLYRIYGGVPLRLTADVVEGVIDPNKLYMARSTPKEVMTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLNNYNLKMLDDFSQVFNAKNKANDEIIFAIRFLEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALDIQNTGNQTYEYNKAVYQNFDDADTRKEATFIASYNKDGKTGELSLYGTHVRKNIGYVNAQGARVYCGDYIFYRLPWVYLTLAEIANMEGDNAAVAKYINLVRKRAYGNAWDETLYAYPETADFTTNELAILHEKDKEFIQEGQRWWDLRRMTLTKGGTPLVFCKEGSLLGDAPILNKSTEAHKLLWPIEKTMLNKDPALEQTPGYK 538
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) SusD-like_3-3nqpB03 B:41-236                                                                                                                                                                        --------------------------------------------------SusD-3nqpB01 B:287-537                                                                                                                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) SusD-like_3-3nqpB04 B:41-236                                                                                                                                                                        --------------------------------------------------SusD-3nqpB02 B:287-537                                                                                                                                                                                                                                     - Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..............hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......-----------.......hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhh........eeeee.........hhhhhh......hhhhh........................hhhhhhh.....hhhhhheeeeeee......eeeeeeee.....ee.....ee....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhh.......hhhhhhhhh........hhhhhhhhhh...hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nqp B  41 YWKTEAQATAYIDGIHKHLRDAAWQHTITFGELRGGRFITGASSDGmGVSNGDIILQNFDETHTGVSKFGDLFGRITNLNLFIARVTDATYLSDEmKNFYLGEVYGLRAFYYFDLYRIYGGVPLRLT-----------KLYmARSTPKEVmTQIKSDLNKSmEYFGNmNDFDPYKRGKKVYWSKAATECLmGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLNNYNLKmLDDFSQVFNAKNKANDEIIFAIRFLEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALDIQNTGNQTYEYNKAVYQNFDDADTRKEATFIASYNKDGKTGELSLYGTHVRKNIGYVNAQGARVYCGDYIFYRLPWVYLTLAEIANmEGDNAAVAKYINLVRKRAYGNAWDETLYAYPETADFTTNELAILHEKDKEFIQEGQRWWDLRRmTLTKGGTPLVFCKEGSLLGDAPILNKSTEAHKLLWPIEKTmLNKDPALEQTPGYK 538
                                    50        60        70        80      | 90       100       110       120       130     | 140       150       160      |  -       180 |     190|      200 |     210       220       230|      240       250       260       270|      280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480  |    490       500       510       520   |   530        
                                                                         87-MSE                                          136-MSE                        167         179  |      191-MSE    202-MSE |                    231-MSE                                 271-MSE                                                                                                                                             419-MSE                                                         483-MSE                                  524-MSE          
                                                                                                                                                                       182-MSE                   208-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NQP)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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