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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION (BACCAC_01654) FROM BACTEROIDES CACCAE AT 1.35 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics, Joint Center For Struct Genomics (Jcsg)
Date :  24 Jun 10  (Deposition) - 28 Jul 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Six-Bladed Beta-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Protein Of Unknown Function (Baccac_01654) From Bacteroides Caccae At 1. 35 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACCAC_01654, ZP_01960044.1
    Organism Common: TBD
    Organism Scientific: BACTEROIDES CACCAE
    Organism Taxid: 411901
    Strain: ATCC 43185

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2CL1Ligand/IonCHLORIDE ION
3MSE4Mod. Amino AcidSELENOMETHIONINE
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:43 , GLN A:276 , HOH A:384BINDING SITE FOR RESIDUE CL A 1
2AC2SOFTWARESER A:30 , GLU A:56 , ASN A:58 , HIS A:142 , ARG A:146 , PHE A:161 , PHE A:186 , TRP A:249 , HIS A:252 , HOH A:298 , HOH A:334 , HOH A:401 , HOH A:445 , HOH A:480 , HOH A:516 , HOH A:548BINDING SITE FOR RESIDUE CIT A 2
3AC3SOFTWAREPHE A:190 , LEU A:191 , HOH A:627BINDING SITE FOR RESIDUE PEG A 3
4AC4SOFTWAREARG A:218 , ASP A:224 , GLY A:242 , ILE A:267 , ASP A:268 , SER A:269 , GLY A:271 , HOH A:372BINDING SITE FOR RESIDUE PEG A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NO2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1His A:115 -Pro A:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NO2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NO2)

(-) Exons   (0, 0)

(no "Exon" information available for 3NO2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
 aligned with A5ZFJ0_9BACE | A5ZFJ0 from UniProtKB/TrEMBL  Length:294

    Alignment length:274
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290    
         A5ZFJ0_9BACE    21 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTICPIRE 294
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....eeeeee....eeeeeee........eeee.....eeee...eeeee.....eeeeee.....eeeeeee.....eeeeee...eeeeee.....eeeeeee.....hhhhh....ee.....eeeee....eeeee.....eeeeee......eeee.....eeee.hhh.eeeee......eeeeee.hhh......eeeeeee.....eeeeee.....hhhhh....eeee.....eeeee..........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3no2 A  21 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKmITRDGRELWNIAAPAGCEmQTARILPDGNALVAWCGHPSTILEVNmKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGmISTICPIRE 294
                                    30        40        50        60        70       |80        90      |100       110       120   |   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280    |  290    
                                                                                    78-MSE             97-MSE                    124-MSE                                                                                                                                                          285-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NO2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NO2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NO2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NO2)

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    His A:115 - Pro A:116   [ RasMol ]  
 

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