Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF CHLORITE DISMUTASE FROM CANDIDATUS NITROSPIRA DEFLUVII IN COMPLEX WITH CYANIDE
 
Authors :  J. Kostan, B. Sjoeblom, F. Maixner, G. Mlynek, P. G. Furtmueller, C. Obi M. Wagner, H. Daims, K. Djinovic-Carugo
Date :  23 Jun 10  (Deposition) - 28 Jul 10  (Release) - 10 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Ferredoxin Like Fold, Chlorite Dismutation, Periplasmatic, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kostan, B. Sjoeblom, F. Maixner, G. Mlynek, P. G. Furtmueller, C. Obinger, M. Wagner, H. Daims, K. Djinovic-Carugo
Structural And Functional Characterisation Of The Chlorite Dismutase From The Nitrite-Oxidizing Bacterium "Candidatus Nitrospira Defluvii": Identification Of A Catalytically Important Amino Acid Residue
J. Struct. Biol. V. 172 331 2010
PubMed-ID: 20600954  |  Reference-DOI: 10.1016/J.JSB.2010.06.014

(-) Compounds

Molecule 1 - CHLORITE DISMUTASE
    Chains: A, B, C, D, E
    EC Number: 1.13.11.49
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: CANDIDATUS NITROSPIRA DEFLUVII
    Organism Taxid: 330214

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 41)

Asymmetric/Biological Unit (4, 41)
No.NameCountTypeFull Name
1CYN5Ligand/IonCYANIDE ION
2GOL13Ligand/IonGLYCEROL
3HEM5Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4PO418Ligand/IonPHOSPHATE ION

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:108 , THR A:109 , TYR A:110 , VAL A:111 , ILE A:139 , TRP A:145 , MET A:157 , HIS A:160 , THR A:161 , ALA A:164 , LEU A:168 , ARG A:173 , PHE A:186 , PHE A:190 , LEU A:205 , PHE A:211 , PO4 A:240 , CYN A:245 , GOL A:246 , HOH A:290 , HOH A:930BINDING SITE FOR RESIDUE HEM A 239
02AC2SOFTWARETHR A:109 , TYR A:110 , TRP A:146 , PHE A:186 , HEM A:239 , HOH A:256 , HOH A:290 , ARG C:203 , PO4 C:242BINDING SITE FOR RESIDUE PO4 A 240
03AC3SOFTWARELYS A:140 , ARG A:215 , ARG A:216 , HOH A:972 , HIS C:219BINDING SITE FOR RESIDUE PO4 A 241
04AC4SOFTWAREHIS A:219 , LYS E:140 , ARG E:215 , ARG E:216 , HOH E:380BINDING SITE FOR RESIDUE PO4 A 242
05AC5SOFTWAREARG A:194 , LEU A:195 , GLU A:196 , HOH A:437 , HOH A:802 , HOH A:985 , TYR E:13BINDING SITE FOR RESIDUE PO4 A 243
06AC6SOFTWAREHIS A:199 , ARG A:203 , HOH A:902 , LYS E:106 , HIS E:177 , PO4 E:240 , HOH E:256 , HOH E:274BINDING SITE FOR RESIDUE PO4 A 244
07AC7SOFTWAREHEM A:239 , GOL A:246 , HOH A:614BINDING SITE FOR RESIDUE CYN A 245
08AC8SOFTWAREARG A:173 , HEM A:239 , CYN A:245 , HOH A:272 , HOH A:579BINDING SITE FOR RESIDUE GOL A 246
09AC9SOFTWAREGLN A:46 , LYS A:50 , HOH A:782BINDING SITE FOR RESIDUE GOL A 247
10BC1SOFTWARELYS A:41 , PRO A:228 , LEU A:229 , ASP A:230 , HOH A:320 , HOH A:606 , HOH A:728BINDING SITE FOR RESIDUE GOL A 248
11BC2SOFTWAREPRO B:108 , THR B:109 , TYR B:110 , VAL B:111 , ILE B:139 , TRP B:145 , MET B:157 , HIS B:160 , THR B:161 , ALA B:164 , TYR B:167 , LEU B:168 , ARG B:173 , PHE B:186 , THR B:188 , PHE B:190 , LEU B:205 , PHE B:217 , PO4 B:243 , CYN B:244 , HOH B:302 , HOH B:927BINDING SITE FOR RESIDUE HEM B 239
12BC3SOFTWARELYS B:140 , ARG B:215 , ARG B:216 , HOH B:338 , HIS D:219BINDING SITE FOR RESIDUE PO4 B 240
13BC4SOFTWAREARG B:194 , LEU B:195 , GLU B:196 , HOH B:456 , HOH B:630 , HOH B:812 , TYR C:13BINDING SITE FOR RESIDUE PO4 B 241
14BC5SOFTWAREHIS B:199 , ARG B:203 , HOH B:412 , HOH B:532 , LYS C:106 , HIS C:177 , PO4 C:241 , HOH C:257 , HOH C:258BINDING SITE FOR RESIDUE PO4 B 242
15BC6SOFTWARETHR B:109 , TYR B:110 , TRP B:146 , PHE B:186 , HEM B:239 , HOH B:291 , HOH B:302 , ARG D:203 , PO4 D:240BINDING SITE FOR RESIDUE PO4 B 243
16BC7SOFTWAREHEM B:239 , GOL B:245 , HOH B:356BINDING SITE FOR RESIDUE CYN B 244
17BC8SOFTWAREARG B:173 , CYN B:244 , HOH B:760 , HOH B:929BINDING SITE FOR RESIDUE GOL B 245
18BC9SOFTWAREGLU B:127 , PRO B:132 , THR B:170 , GLU B:191 , THR B:192 , GLU B:193 , ARG B:194BINDING SITE FOR RESIDUE GOL B 246
19CC1SOFTWAREILE A:35 , ARG A:90 , SER B:117 , MET B:118 , GLU B:121 , GLN B:162BINDING SITE FOR RESIDUE GOL B 247
20CC2SOFTWAREHIS B:219 , HOH B:975 , HOH B:1027 , ASP C:183 , ARG C:216BINDING SITE FOR RESIDUE GOL B 248
21CC3SOFTWAREPRO C:108 , THR C:109 , TYR C:110 , VAL C:111 , TRP C:145 , MET C:157 , HIS C:160 , THR C:161 , ALA C:164 , LEU C:168 , ARG C:173 , PHE C:186 , THR C:188 , PHE C:190 , LEU C:205 , PHE C:217 , PO4 C:241 , CYN C:243 , GOL C:244 , GOL C:246 , HOH C:303BINDING SITE FOR RESIDUE HEM C 239
22CC4SOFTWAREHIS B:219 , LYS C:140 , ARG C:215 , HOH C:791 , HOH C:810 , HOH C:919BINDING SITE FOR RESIDUE PO4 C 240
23CC5SOFTWAREARG B:203 , PO4 B:242 , THR C:109 , TYR C:110 , TRP C:145 , TRP C:146 , PHE C:186 , HEM C:239 , HOH C:303 , HOH C:313BINDING SITE FOR RESIDUE PO4 C 241
24CC6SOFTWARELYS A:106 , HIS A:177 , PHE A:186 , PO4 A:240 , HOH A:267 , HOH A:268 , HIS C:199 , ARG C:203 , HOH C:700BINDING SITE FOR RESIDUE PO4 C 242
25CC7SOFTWAREHEM C:239 , GOL C:244 , HOH C:307BINDING SITE FOR RESIDUE CYN C 243
26CC8SOFTWAREARG C:173 , HEM C:239 , CYN C:243 , GOL C:246BINDING SITE FOR RESIDUE GOL C 244
27CC9SOFTWAREASP A:183 , ARG A:216 , HOH A:766 , HIS C:219 , PRO C:220 , HOH C:589BINDING SITE FOR RESIDUE GOL C 245
28DC1SOFTWARELYS C:106 , PRO C:108 , LEU C:175 , HIS C:177 , HEM C:239 , GOL C:244 , HOH C:291BINDING SITE FOR RESIDUE GOL C 246
29DC2SOFTWAREPRO D:108 , THR D:109 , TYR D:110 , VAL D:111 , ILE D:137 , ILE D:139 , TRP D:145 , MET D:157 , HIS D:160 , THR D:161 , ALA D:164 , LEU D:168 , ARG D:173 , PHE D:186 , THR D:188 , PHE D:190 , LEU D:205 , PO4 D:242 , CYN D:244 , GOL D:245 , HOH D:268 , HOH D:573BINDING SITE FOR RESIDUE HEM D 239
30DC3SOFTWARELYS B:106 , HIS B:177 , PO4 B:243 , HOH B:273 , HOH B:287 , HIS D:199 , ARG D:203 , HOH D:249 , HOH D:894 , HOH D:986BINDING SITE FOR RESIDUE PO4 D 240
31DC4SOFTWARELYS D:140 , ARG D:215 , ARG D:216 , HOH D:267 , HOH D:309 , HIS E:219BINDING SITE FOR RESIDUE PO4 D 241
32DC5SOFTWARETHR D:109 , TYR D:110 , TRP D:145 , TRP D:146 , PHE D:186 , HEM D:239 , PO4 D:243 , HOH D:248 , HOH D:573 , ARG E:203BINDING SITE FOR RESIDUE PO4 D 242
33DC6SOFTWARELYS D:106 , HIS D:177 , PO4 D:242 , HOH D:253 , HOH D:257 , HOH D:631 , HOH D:1023 , HIS E:199 , ARG E:203BINDING SITE FOR RESIDUE PO4 D 243
34DC7SOFTWAREHEM D:239 , GOL D:245 , HOH D:829BINDING SITE FOR RESIDUE CYN D 244
35DC8SOFTWAREPRO D:108 , ARG D:173 , LEU D:175 , HEM D:239 , CYN D:244 , HOH D:265 , HOH D:671BINDING SITE FOR RESIDUE GOL D 245
36DC9SOFTWARETYR B:13 , THR B:75 , LEU B:76 , TYR D:133 , GLU D:193 , ARG D:194 , LEU D:195BINDING SITE FOR RESIDUE GOL D 246
37EC1SOFTWAREPRO E:108 , THR E:109 , TYR E:110 , VAL E:111 , ILE E:139 , TRP E:145 , MET E:157 , HIS E:160 , THR E:161 , ALA E:164 , LEU E:168 , ARG E:173 , LEU E:175 , PHE E:186 , THR E:188 , PHE E:190 , LEU E:201 , LEU E:205 , PHE E:211 , PO4 E:240 , CYN E:242 , HOH E:252 , HOH E:296BINDING SITE FOR RESIDUE HEM E 239
38EC2SOFTWAREARG A:203 , PO4 A:244 , THR E:109 , TYR E:110 , TRP E:146 , PHE E:186 , HEM E:239 , HOH E:248 , HOH E:296BINDING SITE FOR RESIDUE PO4 E 240
39EC3SOFTWARETYR D:13 , ARG E:194 , LEU E:195 , GLU E:196 , HOH E:732BINDING SITE FOR RESIDUE PO4 E 241
40EC4SOFTWAREHEM E:239 , GOL E:243 , HOH E:635BINDING SITE FOR RESIDUE CYN E 242
41EC5SOFTWAREPRO E:108 , ARG E:173 , CYN E:242 , HOH E:645BINDING SITE FOR RESIDUE GOL E 243

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NN2)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1His A:219 -Pro A:220
2His B:219 -Pro B:220
3His C:219 -Pro C:220
4His D:219 -Pro D:220
5His E:219 -Pro E:220

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NN2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NN2)

(-) Exons   (0, 0)

(no "Exon" information available for 3NN2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
 aligned with B3U4H7_9BACT | B3U4H7 from UniProtKB/TrEMBL  Length:264

    Alignment length:238
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256        
         B3U4H7_9BACT    27 ADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 264
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.........eeeeeee.hhhhhhhhhhhhhhh.hhh.eeeeeeeeee.....hhhhhhhhhhhhh..........eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee........eeeeeee.hhhhhhhhhhhhhhhhhhh.eeee....eeeee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nn2 A   1 ADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        


Chain B from PDB  Type:PROTEIN  Length:239
 aligned with B3U4H7_9BACT | B3U4H7 from UniProtKB/TrEMBL  Length:264

    Alignment length:239
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         B3U4H7_9BACT    26 AADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhhh..eeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeee.....hhhhhhhhhhhhh..........eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee........eeeeeee.hhhhhhhhhhhhhhhhhhh.eeee....eeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nn2 B   0 MADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 238
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229         


Chain C from PDB  Type:PROTEIN  Length:239
 aligned with B3U4H7_9BACT | B3U4H7 from UniProtKB/TrEMBL  Length:264

    Alignment length:239
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         B3U4H7_9BACT    26 AADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeee.....hhhhhhhhhhhhh..........eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee........eeeeeee.hhhhhhhhhhhhhhhhhhh.eeee....eeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nn2 C   0 MADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 238
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229         


Chain D from PDB  Type:PROTEIN  Length:239
 aligned with B3U4H7_9BACT | B3U4H7 from UniProtKB/TrEMBL  Length:264

    Alignment length:239
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         B3U4H7_9BACT    26 AADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhhh...eeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhheeeeeeeeee.....hhhhhhhhhhhhh..........eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee........eeeeeee.hhhhhhhhhhhhhhhhhhh.eeee....eeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nn2 D   0 MADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 238
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229         


Chain E from PDB  Type:PROTEIN  Length:239
 aligned with B3U4H7_9BACT | B3U4H7 from UniProtKB/TrEMBL  Length:264

    Alignment length:239
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         B3U4H7_9BACT    26 AADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------Chlor_dismutase-3nn2E01 E:31-224                                                                                                                                                                  -------------- Pfam domains (1)
           Pfam domains (2) -------------------------------Chlor_dismutase-3nn2E02 E:31-224                                                                                                                                                                  -------------- Pfam domains (2)
           Pfam domains (3) -------------------------------Chlor_dismutase-3nn2E03 E:31-224                                                                                                                                                                  -------------- Pfam domains (3)
           Pfam domains (4) -------------------------------Chlor_dismutase-3nn2E04 E:31-224                                                                                                                                                                  -------------- Pfam domains (4)
           Pfam domains (5) -------------------------------Chlor_dismutase-3nn2E05 E:31-224                                                                                                                                                                  -------------- Pfam domains (5)
         Sec.struct. author hhhhhhhhhh...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhhh...eeeeee.........eeeeeee.hhhhhhhhhhhhhh..hhh.eeeeeeeeee.....hhhhhhhhhhhhh..........eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee........eeeeeee.hhhhhhhhhhhhhh..hhh.eeee....eeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nn2 E   0 MADREKLLTESGVYGTFATFQMDHDWWDLPGESRVISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKEFRHNRRFGHPTLLGTMSPLDEILEKFAQ 238
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NN2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NN2)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: Dim_A_B_barrel (36)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (B3U4H7_9BACT | B3U4H7)
molecular function
    GO:0050587    chlorite O2-lyase activity    Catalysis of the reaction: chloride + O(2) = chlorite.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CYN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    His A:219 - Pro A:220   [ RasMol ]  
    His B:219 - Pro B:220   [ RasMol ]  
    His C:219 - Pro C:220   [ RasMol ]  
    His D:219 - Pro D:220   [ RasMol ]  
    His E:219 - Pro E:220   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3nn2
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  B3U4H7_9BACT | B3U4H7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.13.11.49
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  B3U4H7_9BACT | B3U4H7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3U4H7_9BACT | B3U4H7: 3nn1 3nn3 3nn4 4m05 4m06 4m07 4m08 4m09

(-) Related Entries Specified in the PDB File

3nn1 SAME PROTEIN IN COMPLEX WITH IMIDAZOLE
3nn3 R173A MUTANT OF SAME PROTEIN
3nn4 R173K MUTANT OF SAME PROTEIN